Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N12
         (654 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-327|AAF51973.2|  648|Drosophila melanogaster CG2179-PB,...    35   0.084
AE014297-326|AAF51972.2|  783|Drosophila melanogaster CG2179-PA,...    35   0.084

>AE014297-327|AAF51973.2|  648|Drosophila melanogaster CG2179-PB,
           isoform B protein.
          Length = 648

 Score = 35.1 bits (77), Expect = 0.084
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 429 QQNSGSMPKTNAEKCREYRQRQKEKNMKKIAKFRNVADARKV 554
           +Q    + K  AEK RE  +R+KEK+MKKI +   V  ++K+
Sbjct: 172 RQKQEELKKAEAEKQREREERRKEKHMKKIQERGQVEISQKI 213


>AE014297-326|AAF51972.2|  783|Drosophila melanogaster CG2179-PA,
           isoform A protein.
          Length = 783

 Score = 35.1 bits (77), Expect = 0.084
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 429 QQNSGSMPKTNAEKCREYRQRQKEKNMKKIAKFRNVADARKV 554
           +Q    + K  AEK RE  +R+KEK+MKKI +   V  ++K+
Sbjct: 307 RQKQEELKKAEAEKQREREERRKEKHMKKIQERGQVEISQKI 348


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,097,886
Number of Sequences: 53049
Number of extensions: 465343
Number of successful extensions: 951
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)