Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N12
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    27   0.12 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   1.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.5  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   7.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +1

Query: 1   ENLKKCQINKIK*QSQFLIKFRFHAPTYM--IKLQYLRNKYIMNVTCSFEQSNVRI 162
           ++L +CQ++  + +S+ LIK    A  +M  ++L  +R    ++V+CSF   +  I
Sbjct: 75  KSLPRCQLSNKRDRSRELIKAAILANDFMKNLELTQIRRDRGLHVSCSFSAGSTII 130


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 459 NAEKCREYRQRQKEKNMKKIAKFRNVADARKVAKS 563
           N ++ R+YR+R KE++  K  + R  +  RK+  S
Sbjct: 52  NEKEYRKYRERSKERSRDK--RERERSKERKIISS 84


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 459 NAEKCREYRQRQKEKNMKKIAKFRNVADARKVAKS 563
           N ++ R+YR+R KE++  K  + R  +  RK+  S
Sbjct: 52  NEKEYRKYRERSKERSRDK--RERERSKERKIISS 84


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 459 NAEKCREYRQRQKEKNMKKIAKFRN 533
           N  K R+YR+R KE++  +  + R+
Sbjct: 52  NERKYRKYRERSKERSRDRTERERS 76


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 459 NAEKCREYRQRQKEKNMKKIAKFRN 533
           N  K R+YR+R KE++  +  + R+
Sbjct: 52  NERKYRKYRERSKERSRDRTERERS 76


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 498 EKNMKKIAKFRNVADARKVAKSST 569
           EKNM++ AK  NVA  R     +T
Sbjct: 247 EKNMREQAKKMNVASLRSSENQNT 270


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 498 EKNMKKIAKFRNVADARKVAKSST 569
           EKNM++ AK  NVA  R     +T
Sbjct: 123 EKNMREQAKKMNVASLRSSENQNT 146


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 459 NAEKCREYRQRQKEKNMKKIAKFRN 533
           N  + R+YR+R KE++  +  + R+
Sbjct: 285 NEREYRKYRERSKERSRDRTERERS 309


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 459 NAEKCREYRQRQKEKNMKKIAKFRN 533
           N    R+YR+  KE++  +I + R+
Sbjct: 285 NENSYRKYRETSKERSRDRIERERS 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,328
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)