Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N11
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   2.3  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   5.4  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   7.2  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 160 VQQLCFIFPHLCTFTDIK-QLINHHYYTFKPE 68
           +QQ+C +F H  T  D + Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 479 YYRIKNGIQWNPLCQFQRECFYF-QMDFKTRKLFQRKKQIYCFVNYFKKSVGILL 640
           Y  +KN ++W P+  +  + F F  +  K  K ++   + + F+   + SV ++L
Sbjct: 125 YIMLKNSLKWLPVIGWGMQLFRFIFLSRKWDKDYETMSRHFKFIRNVRDSVSLIL 179


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 119 ESAQMWENETKLLDVTSRVPPKSPLKK 199
           ES +  ENE   +DVT  VPP   L +
Sbjct: 25  ESEKEGENEVLEIDVTKPVPPSKKLMR 51


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 157 QQLCFIFPHLCTFTDIKQLINHHYYTFKPEETLN-RQNKTNHTTALLAFP 11
           QQL  IFP +  F ++   + + Y     ++ L  R N  +  T+LL  P
Sbjct: 489 QQLIDIFPTILRFLEMPSFVVYTYAAIALDQLLTVRHNHVHIFTSLLIAP 538


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 212  SFTEIFSVDFLEEPEKLRPAALFHFP 135
            SF  IFS  F EEPE  +    F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 444 FVLQFNIL*RKIIIELRTEFNGIHCVSFKGSVFISKWIS 560
           F+ QF+++ ++++I +  + N ++C   +     SK IS
Sbjct: 448 FLAQFHLVIKRVLINIHAQPNAVYCRLMEEVGMTSKSIS 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,220
Number of Sequences: 5004
Number of extensions: 50927
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)