Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N11
         (652 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal degene...    28   9.6  
BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p pro...    28   9.6  
AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA...    28   9.6  
AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD...    28   9.6  
AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC...    28   9.6  
AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB...    28   9.6  

>M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal
           degeneration C protein protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 553 HLEIKTLPLKLTQWIPLNSVLNSIIIFLHRILNCST 446
           H  I     ++ +W+PL SVLNS ++ +H   + ST
Sbjct: 243 HKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDST 278


>BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p
           protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 553 HLEIKTLPLKLTQWIPLNSVLNSIIIFLHRILNCST 446
           H  I     ++ +W+PL SVLNS ++ +H   + ST
Sbjct: 185 HKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDST 220


>AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA,
           isoform A protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 553 HLEIKTLPLKLTQWIPLNSVLNSIIIFLHRILNCST 446
           H  I     ++ +W+PL SVLNS ++ +H   + ST
Sbjct: 185 HKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDST 220


>AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD,
           isoform D protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 553 HLEIKTLPLKLTQWIPLNSVLNSIIIFLHRILNCST 446
           H  I     ++ +W+PL SVLNS ++ +H   + ST
Sbjct: 243 HKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDST 278


>AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC,
           isoform C protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 553 HLEIKTLPLKLTQWIPLNSVLNSIIIFLHRILNCST 446
           H  I     ++ +W+PL SVLNS ++ +H   + ST
Sbjct: 243 HKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDST 278


>AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB,
           isoform B protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 553 HLEIKTLPLKLTQWIPLNSVLNSIIIFLHRILNCST 446
           H  I     ++ +W+PL SVLNS ++ +H   + ST
Sbjct: 243 HKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDST 278


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,030,397
Number of Sequences: 53049
Number of extensions: 484602
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)