Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N11
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 528 KGSVFISKWISKLENSFKEKNKFIVL*IISRRV 626
           +G  +  K I+K+ NSF EKNK  VL  I +RV
Sbjct: 773 RGIEYYMKIITKIINSFFEKNKNFVLNDIRKRV 805


>Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK792.4b protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 504 NGIHCVSFKGSVFISKWISKLENSFKEKNKFIVL 605
           N IHC ++ GSV +   +S L N+F +K +  V+
Sbjct: 263 NAIHCAAYSGSVPV---LSHLLNAFSKKKRHYVM 293


>Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical
           protein ZK792.4a protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 504 NGIHCVSFKGSVFISKWISKLENSFKEKNKFIVL 605
           N IHC ++ GSV +   +S L N+F +K +  V+
Sbjct: 278 NAIHCAAYSGSVPV---LSHLLNAFSKKKRHYVM 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,975
Number of Sequences: 27780
Number of extensions: 279012
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)