Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N10
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    29   0.44 
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    28   1.3  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   9.5  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  MCKDTTKLNXNCTNHYKFHS 127
           +C + TK++   T HYKFHS
Sbjct: 250 VCDENTKISLTNTEHYKFHS 269


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 107 NHYKFHSKEI*RVKSPRSGIWGNTRIIRGT 196
           +HY + S+ I  V+    G++GNT+I+  T
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYGNTKIVNET 331


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 126 VKKYNVLNPLXQVYGGIPVLYE-GP 197
           +KK    +P  Q+YGGI  LY+ GP
Sbjct: 19  MKKRFFFSPSFQIYGGISGLYDYGP 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,952
Number of Sequences: 5004
Number of extensions: 45713
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)