Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_N02
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 29 3.2
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 29 3.2
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 29 3.2
06_03_1259 - 28800954-28802468 29 4.3
09_04_0422 + 17422080-17422217,17422886-17423067,17423145-174233... 28 5.6
05_07_0240 + 28606345-28607316 28 5.6
03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480... 28 5.6
09_03_0139 + 12692844-12694982 28 7.5
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 28 7.5
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 406 PLAEHTIRAPSNLNTAHSVGVVSD 335
P+ +H APS + AH +G++SD
Sbjct: 229 PVTDHNFDAPSKIPFAHGMGLISD 252
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 213 FVRAMSEGLEYETIVQNGPRKVTMTTGLDRETIRAAYEDVRSDTTPTEWAVFKFEGARIV 392
F+R + EG+E V G KV T GLD+ + + DT W +E +
Sbjct: 33 FLRKLVEGIEDTVGVGKGTSKVYATIGLDKARV-GRTRTLADDTAAPRW----YESFHVY 87
Query: 393 CS 398
C+
Sbjct: 88 CA 89
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 405 GSDFTEFRTQFSDDERAFGYLRLQ-MGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAI 581
G + +F DE + + DE ++ K F++W V ++ ++ K
Sbjct: 69 GESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDR 128
Query: 582 IKDIISNFAVELQLENQSXIXID 650
K + VELQ + S + +D
Sbjct: 129 FKRELDGIQVELQATDPSEMSMD 151
>06_03_1259 - 28800954-28802468
Length = 504
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 557 GSVDHRHVRSYPRHEHKFLAFRHLVSHLQPEVSECAFIIRELRAELREVATPGRAHY 387
G R +PR +H+ L H + H+ E ++ RE R A PG H+
Sbjct: 151 GGEPRRLELQFPR-QHRELIHGHYIQHVIDEATKMRLRSRERRLYTNRAAAPGDDHH 206
>09_04_0422 +
17422080-17422217,17422886-17423067,17423145-17423331,
17423602-17423769,17423915-17424217,17424312-17424497
Length = 387
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 653 LVDVYXRLIFKLQLHSKVRYDVLDDSFVGGHLGSVD 546
+VD++ +FK+ LHS+ Y + D + G L SVD
Sbjct: 304 MVDIHIAAVFKV-LHSEQNYLRIQDDTLEGTLASVD 338
>05_07_0240 + 28606345-28607316
Length = 323
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 458 ECAFIIRELRAELREVATPGRAHYPGAFKLEHRP 357
E A I+ LRA +AT AH P AF+ HRP
Sbjct: 73 EVAAAIQHLRAADPALATVIDAHDPPAFQCPHRP 106
>03_05_0502 +
24947444-24947665,24947768-24947823,24947929-24948099,
24948508-24948631,24949086-24949142,24949216-24949312,
24949619-24949826,24950637-24950697,24950793-24950846
Length = 349
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 553 RLITDTFGPTHVMNINFLRLDISSPI-CNLRYPNARSSSENCVRNSVKSLPLAEH 392
RL++ HV+N N LD+++P+ NL PN + + V+ L L +H
Sbjct: 237 RLVSFKGKTIHVLNKNEHALDMAAPVHDNLGDPNGYTDDYSLVKKRTNVLLLGDH 291
>09_03_0139 + 12692844-12694982
Length = 712
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 349 RPSGRCSSLKAPG*CARPGVATSRSSARSSLMMNAHS 459
+PSG + L PG AR A + SSA SS HS
Sbjct: 596 QPSGAAAVLSQPGLVARLAEALAASSASSSRSARDHS 632
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 581 DSFVGGHLGSVDHRHVRSYPRHEHKFLAFRH 489
+ +V H G++ +RS+ RH K LAF H
Sbjct: 491 NKYVNQHCGAMTESVIRSFTRHILKGLAFLH 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,918
Number of Sequences: 37544
Number of extensions: 394860
Number of successful extensions: 955
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -