Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_M24
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   0.52 
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   2.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   2.8  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   3.7  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    23   8.5  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   8.5  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    23   8.5  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    23   8.5  

>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 0.52
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 96  PRPLLQSPKLPACWEPTFSVLLNRRQRVW 10
           P PL+  P   + W PT   L++ R  VW
Sbjct: 277 PMPLISHPLYSSSWIPTLHDLVSTRCSVW 305


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 252 KHLSTPFGEVFCCSFPD 202
           +++  PF E+ CC  PD
Sbjct: 177 EYIRVPFAEINCCKLPD 193


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 204 DTXVSTSNYNCXVVGTDGPVVSEDHCSNL 118
           DT +   N N        P+VSE H SNL
Sbjct: 133 DTNILVENINSQETVNSSPLVSELHYSNL 161


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 207 PDTXVSTSNYNCXVVGTDGPVVSEDHCSNL*ICTPHQPRPLLQSPKLPACWEPTFS 40
           PD   S  NY C V+   GP   ++  +NL    P   +PLL+     A +EP+ S
Sbjct: 215 PDNQ-SAWNYLCGVLDKSGPSKLDNLIANLRKNLPALHKPLLE---FLAMYEPSSS 266


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 99  QPRPLLQSPKLPACWEPTFSVLLNRRQRVW 10
           QP P+     L AC      V L + Q +W
Sbjct: 242 QPSPVAIHAMLTACQSGNIDVALEKLQGIW 271


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 312 VSSTMSRXCSSHFLMSQARHKHLSTPFGEVF 220
           V +T+   CS+ FL+  A    L  P  EV+
Sbjct: 141 VGATVGDLCSATFLLGFAAGSVLFAPLSEVY 171


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 186 SNYNCXVVGTDGPVVS 139
           +NYN  +VG DG  VS
Sbjct: 371 ANYNVKIVGADGASVS 386


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 231 GEVFCCSFPDTXVS 190
           G+VFCCS P    S
Sbjct: 304 GKVFCCSLPGNNAS 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,168,046
Number of Sequences: 5004
Number of extensions: 19072
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)