Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_M24
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    26   5.6  
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509           26   5.6  
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    26   7.4  
06_01_0220 - 1673657-1675765                                           25   9.7  
04_01_0498 - 6525263-6525616                                           25   9.7  

>09_04_0247 +
          16030543-16031324,16032812-16033088,16033374-16033559,
          16033714-16033866,16034277-16034702,16035922-16037668,
          16037687-16038183,16038519-16038709,16038786-16038941,
          16040077-16040311,16040416-16040723,16041279-16041439,
          16041852-16041895,16041975-16042067
          Length = 1751

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 96 PRPLLQSPK--LPACWEPTFSVLLNRRQR 16
          PRP    P   LPA    TF ++L RRQR
Sbjct: 3  PRPACAPPPRLLPAAAAATFPLILRRRQR 31


>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
          Length = 332

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 69 LPACWEPTFSVLLNRRQRVWP 7
          LPA W  TF++  N    VWP
Sbjct: 19 LPAAWSATFTMTNNCGYTVWP 39


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 315 FVSSTMSRXCSSHFLMSQARHKHLSTPFGEVFCCS 211
           F   ++    + H ++S  RHKH+   FG   CC+
Sbjct: 184 FYQRSIEEFNTEHTILSHIRHKHIIRLFG---CCT 215


>06_01_0220 - 1673657-1675765
          Length = 702

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 53  SQHAGNFGDCSSGRGWWGVHIQRLL 127
           ++HAG+FG  S  +G +G++  ++L
Sbjct: 256 TKHAGHFGSTSGEKGKFGLNAAQIL 280


>04_01_0498 - 6525263-6525616
          Length = 117

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 62  AGNFGDCSSGRGWW 103
           A   G C  GRGWW
Sbjct: 2   ASGAGMCGGGRGWW 15


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,283,569
Number of Sequences: 37544
Number of extensions: 145283
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)