Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_M24
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49829-9|AAQ81273.1|  673|Caenorhabditis elegans Uncoordinated p...    28   1.3  
S34207-1|AAB21818.1|  673|Caenorhabditis elegans unc-18 protein.       28   1.3  
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical p...    27   3.9  
Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical pr...    25   8.9  
U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-bie...    25   8.9  
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    25   8.9  

>U49829-9|AAQ81273.1|  673|Caenorhabditis elegans Uncoordinated
           protein 18, isoform c protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 317 CSSQARCRVFAPRTS*CH-RHAINTLAPLLA 228
           CSS + C+ F+   S CH  H I TL+P  A
Sbjct: 11  CSSSSCCQFFSLFLSLCHAEHQIQTLSPSFA 41


>S34207-1|AAB21818.1|  673|Caenorhabditis elegans unc-18 protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 317 CSSQARCRVFAPRTS*CH-RHAINTLAPLLA 228
           CSS + C+ F+   S CH  H I TL+P  A
Sbjct: 11  CSSSSCCQFFSLFLSLCHAEHQIQTLSPSFA 41


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 95  HGRYCSHQSYRRAGNPHFL--FC 33
           HG YC H+  RRA  P++L  FC
Sbjct: 148 HGPYCKHRHRRRAVCPNYLAGFC 170


>Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 200 VSGKLQQKTSPKGVLRCLWRACDIKKCEEQXRDIVLE 310
           V+GKL  K    GV   L    ++++ +E+  DI+LE
Sbjct: 292 VAGKLAGKEEEAGVKNILESIGEVEEAKEKLSDIILE 328


>Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 200 VSGKLQQKTSPKGVLRCLWRACDIKKCEEQXRDIVLE 310
           V+GKL  K    GV   L    ++++ +E+  DI+LE
Sbjct: 292 VAGKLAGKEEEAGVKNILESIGEVEEAKEKLSDIILE 328


>Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical
           protein F38E11.4 protein.
          Length = 751

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 114 ICTPHQPRPLLQSPKLP 64
           IC P  P+P+L +P+ P
Sbjct: 388 ICDPADPKPMLTTPETP 404


>U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-biedl
           syndrome) proteinprotein 2 protein.
          Length = 699

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 180 YNCXVVGTDGPVVSEDHCSNL 118
           Y+C ++GTD  V+  D  +NL
Sbjct: 94  YDCIIIGTDSSVICYDVHNNL 114


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 14  TRCLRFSKTENVGSQHAGNFGDCSSG 91
           T C R    E +G + +GNF DC  G
Sbjct: 160 TLCERGMMYEMIGMEISGNFKDCCRG 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,773,142
Number of Sequences: 27780
Number of extensions: 119796
Number of successful extensions: 303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)