Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_M24
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   3.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   6.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   6.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   6.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   8.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.3  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 120 DYYSGPPIRPVRPCRQ 167
           D Y G  IRP +P RQ
Sbjct: 73  DAYGGLNIRPGQPSRQ 88


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 98  WWGVHIQRLLQWSSDTT 148
           W   H+QRLL    D+T
Sbjct: 273 WAPFHVQRLLYVYEDST 289


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 15  LAVSDSAKQKMWVPST 62
           L +S    +K+WVP T
Sbjct: 106 LTLSGDFAEKIWVPDT 121


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 128 VVIFEYAHP 102
           VVIF +AHP
Sbjct: 292 VVIFHFAHP 300


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 12  TLAVSDSAKQKMWVPST 62
           TLA+S S   ++W P T
Sbjct: 74  TLALSISMLARIWKPDT 90


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 248 CLWRACDIKKCEEQXR 295
           C W   D++KC+   R
Sbjct: 389 CTWSEGDLEKCKALTR 404


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 248 CLWRACDIKKCEEQXR 295
           C W   D++KC+   R
Sbjct: 389 CTWSEGDLEKCKALTR 404


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 248 CLWRACDIKKCEEQXR 295
           C W   D++KC+   R
Sbjct: 389 CTWSEGDLEKCKALTR 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,173
Number of Sequences: 438
Number of extensions: 1532
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)