Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_M09
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 31 0.11
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 29 0.77
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 28 1.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 4.1
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 4.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.1
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 7.2
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 7.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 7.2
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +2
Query: 344 LRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGFEKRQRKPSIPKN*ICDKNDRREDVF 523
+R ++ Q +D++ LG TV K D +GF K QR+ +N + ND +E +
Sbjct: 1583 IRQQIEETNAQIADVEDTLGATVKKSAPLDKLRGFMKYQRRSEHYRNPLKRTNDWKE-LS 1641
Query: 524 DHRRHHGRRVQQAR 565
R RVQ AR
Sbjct: 1642 VRLREDELRVQTAR 1655
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 368 IRQSSDLK--RKLGITVWKEITEDVNQGFEKRQRKPSIPKN*ICDKNDRREDVFDH 529
+RQ++DL + V+K++TE+ + F + KPS+ + KN +ED +H
Sbjct: 58 VRQNADLSITKDNFRDVYKKLTENEDDSFANQAEKPSMEQQ--NSKNSIKEDANEH 111
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 514 FSAVVFITDSVFWYTWLSLTFFKPLIDVLGDLF 416
F A FI S+FW+ W ++ ++G LF
Sbjct: 403 FPAAFFIPISLFWFGWTGRESVHWIVPIVGTLF 435
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 586 DSELRI*PSLLDTPAVMPPMIEDVFSAVVFITDSVFWYTWLSLTFFKPLIDVLGDLFPHR 407
D EL+ LL + P I VFS +++ DS ++Y L ++ +LG L R
Sbjct: 316 DLELKSVSQLLIDEVLHPFYIFQVFSIILWSMDSYYYYAICILII--SVVSILGSLIETR 373
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 212 MSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIAT 343
++G G++ T ELA L P +L E+ + L E++I T
Sbjct: 88 LTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVT 131
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 263 GLTPEQADQLRAE--WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEI 424
GL E + + R+ W E+A + L+ +++SK+ SSD+ L W E+
Sbjct: 270 GLKEESSHEPRSSQHWKNEVAMKD----LLKNLIKSKLESSSDVNTPLIFDPWPEL 321
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 450 KNVKESQVYQKTESVIKTTAEKTSSIIG--GITAGVSSKLGQMRNSESFRSIEERVGSAY 623
+NVKE + SV E I G GI V K+ + + ESF ER+G Y
Sbjct: 3 QNVKEKHAGKSDTSVSSLECEIDYHIEGSDGIPV-VEPKISEFVDMESFIRRVERLGKKY 61
Query: 624 ENVK 635
+K
Sbjct: 62 GAIK 65
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 462 ESQVYQKTESVIKTTAEKTSSIIGGITAGVSSK 560
ES V+ K E++ + + +T + GIT +SSK
Sbjct: 806 ESFVFNKLEAMAQLPSPRTPVLDAGITQALSSK 838
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 311 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGFEKRQR 463
+L V + TLR + +R++ +L+RKL E++E +N+ F+ R
Sbjct: 1833 QLQEVREANQTLRKDQDTLLRENRNLERKL-----HEVSEQLNKKFDSSAR 1878
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,767
Number of Sequences: 5004
Number of extensions: 49091
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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