Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_M09
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0117 + 14942478-14942628,14943247-14943315,14943701-149438... 35 0.049
02_01_0286 + 1921049-1921726 34 0.085
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 30 1.4
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971... 30 1.8
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 29 2.4
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 29 3.2
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 29 4.2
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 29 4.2
02_02_0524 + 11179224-11179469,11179543-11181465 28 5.6
09_04_0278 + 16333261-16334172,16334900-16335532 28 7.4
11_01_0484 - 3720376-3720671,3721209-3721767,3722209-3722640,372... 27 9.8
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452... 27 9.8
>10_08_0117 +
14942478-14942628,14943247-14943315,14943701-14943801,
14944395-14944619
Length = 181
Score = 35.1 bits (77), Expect = 0.049
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 245 TPDELAGLTPEQADQLRAEWSRELARVE--DEIAT-LRTVLQSKIRQSSDLKRKLGITVW 415
+PDE GL + +R+ + E+A E D + L Q Q DL K G+TV
Sbjct: 23 SPDEYGGLGIKDLHPIRSSTAYEVAGTEVWDMLRNWLNIGFQLPRDQDLDLAEKKGLTVM 82
Query: 416 KEITEDVNQGF 448
TE+V QGF
Sbjct: 83 LSTTENVEQGF 93
>02_01_0286 + 1921049-1921726
Length = 225
Score = 34.3 bits (75), Expect = 0.085
Identities = 37/141 (26%), Positives = 57/141 (40%)
Frame = +2
Query: 191 VQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKI 370
++T +G G G T +LA P + + A + +E T R + +
Sbjct: 1 MKTTTVTPAGFGRRGG-ETEGDLAAAMPREETTMSAGARARRKGLPEETLTRRK--ERLV 57
Query: 371 RQSSDLKRKLGITVWKEITEDVNQGFEKRQRKPSIPKN*ICDKNDRREDVFDHRRHHGRR 550
R+ L G W+ + QG +RQR+P++ RR+D RRH G
Sbjct: 58 RRRRSLDESEGRPGWRATSPC--QG-RRRQRRPAL----------RRDDRGSWRRHSGGN 104
Query: 551 VQQARSDAQLGVFPLHRRTRR 613
R + G FP+ RR RR
Sbjct: 105 AIGLRQERASGGFPVKRRRRR 125
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 284 DQLRA---EWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 400
D+ RA EW + + + D+I TL L SK R + D + +L
Sbjct: 220 DEFRAAKKEWGSDRSMLVDQIGTLEVNLDSKTRMAEDFRSRL 261
>01_06_1009 +
33796450-33796824,33796926-33796970,33797069-33797182,
33797679-33797759,33798038-33798211,33798353-33798438,
33799157-33799901
Length = 539
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +2
Query: 188 GVQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLR-AEWSRELARVEDEIATLRTVLQS 364
G +E S G AGDI E +PE + +R + EL + ++ L
Sbjct: 86 GEGDSEPPASSDGAAGDIAASAEQPEASPEDLEDIRQVKRVLELLQKNRDMTFGEVKLTI 145
Query: 365 KIRQSSDLKRK--LGITVWKEITED 433
I D++RK LGI EIT D
Sbjct: 146 MIEDPRDIERKRLLGIEDPDEITRD 170
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 275 EQADQLRAEWSRELARVEDEIATLRT-VLQSKIRQSSDLKR 394
E+ D LRAE + +L+ E+EIA L T + Q++I ++ + R
Sbjct: 674 EREDALRAELASQLSEKEEEIARLNTKINQTEIHATNLISR 714
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 272 PEQADQLRAEWSRELARVEDEIATLR 349
P ++DQL W R + +DE+A+L+
Sbjct: 61 PPESDQLARAWLRRVQEAQDEVASLK 86
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 383 PSFDGSCFAVQFSKSRFHLRHGLARDSIQRVTGL 282
PS G+C A+QF + +L HGL + ++ GL
Sbjct: 543 PSTLGNCLALQFLYLQANLLHGLIPKELNKLRGL 576
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 28.7 bits (61), Expect = 4.2
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Frame = +2
Query: 227 VAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI 406
++G+ P A + E+ D +R E VED ++ + K SSDLKR
Sbjct: 152 ISGETKPPPAAAAVKEEEED-VRKGSPEEAGAVEDRVSGHESGRSCKESNSSDLKRPEND 210
Query: 407 TVWKEITEDVNQGFEKRQRKPSIP-KN*ICDKNDRR-EDVFDHRRHHGRRVQQARSDAQL 580
+ +D ++ E+ + + P I K + E V + V++ SD Q
Sbjct: 211 PA---VADDDDREAEEEEEAAAAPAAGDIAVKEEASGESVAGSKE---ADVEKESSDVQS 264
Query: 581 GVFPLHRRTRRFG 619
P RR R+ G
Sbjct: 265 SASPSRRRRRKGG 277
>02_02_0524 + 11179224-11179469,11179543-11181465
Length = 722
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +3
Query: 393 VNLASRCGKRSPRTSIRGLKNVKESQVYQ--KTESVIKTTAEKTSSIIGGITAGVSSKLG 566
+ LA K S R GL+ E++ + +T+ ++ E+ + I A + S +
Sbjct: 157 LRLAVEYLKESARVQFPGLRAAVEARAAREARTQEILTAKVEQLRRNLAAIKAEIRSAID 216
Query: 567 QMRNSESFRSIEERVGSAYEN 629
++RN IE + Y N
Sbjct: 217 EIRNGLDIIRIESEKFNNYAN 237
>09_04_0278 + 16333261-16334172,16334900-16335532
Length = 514
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 550 TPAVMPPMIEDVF--SAVVFITDSVFWYTWLSLTFFKPLIDVLGDLF 416
TP M++++F + V+ I DS+ W WL L + + LG +F
Sbjct: 204 TPEEFKWMLDELFLLNGVLNIGDSIPWLDWLDLQGYIKRMKKLGKMF 250
>11_01_0484 -
3720376-3720671,3721209-3721767,3722209-3722640,
3723126-3723485
Length = 548
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 344 LRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGFEKRQRKPSIP 478
L +L K R + + KR W E++ N GF+ P+ P
Sbjct: 20 LSRLLIDKPRLTLERKRSFDEQSWSELSHRQNDGFDSIMHSPAFP 64
>04_03_0745 +
19244089-19244521,19244638-19244723,19245090-19245221,
19245335-19245499,19245602-19245892
Length = 368
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 527 HRRHHGR-RVQQARSDAQLGVFPLHRRTR 610
H HG V Q DAQ+GVFP+ R R
Sbjct: 257 HLSSHGAMEVDQDTRDAQVGVFPVERGER 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,986
Number of Sequences: 37544
Number of extensions: 292902
Number of successful extensions: 933
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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