Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_M09
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   4.8  
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    23   8.4  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
 Frame = +2

Query: 311 ELARVEDEIATLRTVLQS---KIRQSSDLKRKLGITV--WKEITEDVNQGFEKRQRKPSI 475
           +LA V+DE+  LRT ++    +IR    L  K   T+  ++   E   Q +   +     
Sbjct: 327 QLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGT 386

Query: 476 PKN*ICDKNDRREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTR 610
            +  + D   ++  +    R+   RV + + DA+     L  R R
Sbjct: 387 VRRTLQDVQAKQAAIERGMRNASERVTRIQKDARQIEQDLQERNR 431


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 308 RELARVEDEIATLRTVLQSKIR-QSSDLKRKLGITVWKEITEDVNQGFEKRQRKPSIPKN 484
           RE  + ED +  +RT  +  +  + + +  +  +T+W+E+   ++   + R R PS+  N
Sbjct: 77  RETVKKED-VQRIRTNFKGHLLLELAPMSHQETMTLWREVAAALDGKAKCRPRTPSMRVN 135


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,399
Number of Sequences: 2352
Number of extensions: 11600
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)