Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_M01
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   1.4  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    27   2.4  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    25   9.7  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 253 LPDGNSWCPDCVEAEP-VVRHYLSELDKSIIFVYVDVGDREYWK 381
           LP G  WC  C+  +P ++R ++  L    +F+   V   E+WK
Sbjct: 688 LPPG--WCEYCLAHQPFLLRSFIRSL-PDCLFINTQVKHHEHWK 728


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 412 RSKLMVIPTLIKWKGVQRLEGSQCSNRELLQMLFEEEDNR 531
           R+K+  + T + WK V++    Q +N    + LFEE D++
Sbjct: 75  RAKVNRLKTYLSWKEVRKKAKEQDANPADTKDLFEEVDSK 114


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 286 VEAEPVVRHYLSELDK-SIIFVYVDVGDREYW 378
           V+  P  RH L+E+DK S +   V  G  +YW
Sbjct: 121 VQVSPEARHKLAEIDKGSHLEANVSGGLLKYW 152


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 253 LPDGNSWCPDCVEAEPVVRHYLSELDK 333
           L D N+ CP C+    + + YL+++++
Sbjct: 261 LLDPNTTCPQCMARRKMQQKYLAQIEE 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,420
Number of Sequences: 5004
Number of extensions: 43837
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)