Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_M01
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical ...    81   4e-16
Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical p...    31   0.72 
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    28   5.1  
U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical p...    27   8.9  
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    27   8.9  
AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.1 protein.
          Length = 132

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
 Frame = +1

Query: 238 FSGSK-LPDGNSWCPDCVEAEPVVRHYLSELDKS---IIFVYVDVGDREYWKDKECPFRT 405
           F+GSK L  G SWCPDCV AEPVV   + +   +   + FV V VG+RE W+D    FRT
Sbjct: 32  FTGSKILTTGESWCPDCVVAEPVVEEVIKDAAVAGLDVHFVTVFVGNREVWRDPAVGFRT 91

Query: 406 DSRSKLMVIPTLIK-WKGVQRLEGSQCSNRELLQMLFEEED 525
           D   KL  IPTL++     +RL   Q +N+ L++  F EED
Sbjct: 92  DPTLKLTCIPTLLEVGNKAKRLLERQIANKHLVKDFFTEED 132


>Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical
           protein C25A1.3 protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 274 CPDCVEAEPVVRHYLSELDKSIIFVY 351
           CP+ +   P+V+H L ELD  ++FV+
Sbjct: 228 CPEFLAYFPLVKHLLEELDMELLFVH 253


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 367 REYWKDKECPFRTDSRSKLMVIPTLIKWKGVQRLEGSQCSNR 492
           R+ +K K  P  TD  S    I     W  +QR+  S C NR
Sbjct: 56  RDVFKKKSSPCETDVNSNAEHIGGESIWGKIQRMSVSNCQNR 97


>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 271 WCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREY 375
           WC  C+ A  +V + L +L KS +   +  G+R Y
Sbjct: 119 WCCSCIIAMILVMNRLLDLSKSTLSTLIFEGNRTY 153


>U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical
           protein T20D4.7 protein.
          Length = 155

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 271 WCPDCVEAEPVVRHYLSELDKSIIFVYV 354
           WCP C    P+++ +  E+++    V+V
Sbjct: 50  WCPPCRGFTPILKDFYEEVNEEFEIVFV 77


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 369 RILEGQRVPVQNGQSL*VDGHTDFNKMEGSTE 464
           +I+EG+ +PV   Q L  D H + NKM GS E
Sbjct: 45  QIVEGRELPVM--QDL-ADRHPEINKMYGSAE 73


>AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical
           protein Y52E8A.3 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
 Frame = +1

Query: 268 SWCPDCVEAEPVVRHYLSELDKS-----IIFVYVDVGDRE---YWKDKE-----CPFRTD 408
           SWCP C    P ++ +  E+ K+     IIFV  D    +   Y+K+ +      PF +D
Sbjct: 36  SWCPPCRAFTPKLKEFFEEIKKTHPEFEIIFVSRDRNSSDLVTYFKEHQGEWTYIPFGSD 95

Query: 409 SRSKLM 426
               LM
Sbjct: 96  KIMSLM 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,964,859
Number of Sequences: 27780
Number of extensions: 239666
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)