Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L21
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          83   3e-17
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    41   1e-04
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   7.2  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   7.2  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.5  

>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 42/140 (30%), Positives = 69/140 (49%)
 Frame = +3

Query: 162 SRLGDCEVCAANKALYTCPKCEVKTCCLNCVRIHKKELECDGIRDRTKFIRMKDFTDTDL 341
           +RLG C  C  N + Y CP+C+ + CCL C   HK+  +C G RD   F+      +  L
Sbjct: 4   NRLGICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPATFVPKSKLVN-HL 62

Query: 342 LSDYRLLEECARFVWGVKRDDKKRFTRIDKDLPIHLFKLKMAARQRGIVLQFLAQNFTRH 521
            SD+  L    R +   +    +   R ++    +  +LK +  + GI ++F   +  + 
Sbjct: 63  NSDFNFLSGVERLINRKENGSHQVSNRAER----NRLQLKRSLERAGINIKFAPPSNKKR 118

Query: 522 KNNTTRYNYKSNLINWRVEW 581
           + N T Y+ KS+LI W +EW
Sbjct: 119 RLNRTHYDKKSHLIKWSIEW 138


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 177 CEVCAANKALYTCPKCEVKTCCLNCVRIHKKELECDGIRDRTKFIRMKD 323
           C +C  ++  Y CPKC    C L C +IH+ + E     + T F  +K+
Sbjct: 4   CSICNESEIKYKCPKCSFPYCSLPCWKIHQSQCETVNDNNTTTFKGVKE 52


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 546 YKSNLINWRVEWIFPNVDKEPIKYVDEKCPEQKKL 650
           Y    I + VEW+   + K    YV   CP Q +L
Sbjct: 76  YAMEAIEYHVEWLLKELKKHRDSYVIFDCPGQVEL 110


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 120  SADSDCDELSQDGLSRLG-DCEVCAANKALYTCPKCEVKTC 239
            S ++  + +  D  SRLG DC   +  K L++C K  + TC
Sbjct: 951  SENNSLNLVCSDTSSRLGIDCFYISQKKLLFSCDKDRLLTC 991


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 277 SNSFLWILTQFKQHVLTSHLGHVY 206
           ++S L  LT+  Q + T HLGH Y
Sbjct: 291 TDSSLLSLTKLSQSLTTLHLGHCY 314


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 62  DCGLNQRSTEILINNN*QYVC 124
           DC LN  S EIL++N   ++C
Sbjct: 542 DCPLNLTSYEILLDNYKDFIC 562


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 375 RFVWGVKRDDKKRFTRI 425
           RF+WGVK  DK  F  I
Sbjct: 144 RFIWGVKFIDKNAFYHI 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,282
Number of Sequences: 5004
Number of extensions: 50802
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)