Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_L21
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70783-9|CAA94857.2| 455|Caenorhabditis elegans Hypothetical pr... 58 4e-09
AL021180-2|CAA15981.2| 188|Caenorhabditis elegans Hypothetical ... 32 0.31
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 3.8
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 29 3.8
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 28 6.7
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 28 6.7
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 27 8.8
U64833-5|AAK95860.1| 402|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z70783-9|CAA94857.2| 455|Caenorhabditis elegans Hypothetical
protein ZK856.9 protein.
Length = 455
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 177 CEVCAANKALYTCPKCEVKTCCLNCVRIHKKELECDGIRDR-TKFIRMKDFTDTDLLSDY 353
C+VC N+ Y CP+CE++TC L+C + HK + CDG+R TK ++ + + D
Sbjct: 84 CKVCLKNEHKYKCPRCEMRTCSLDCSKKHKADNNCDGVRQAFTKVDKLSQYDPQKSIDDQ 143
Query: 354 RLL 362
+ +
Sbjct: 144 KFM 146
>AL021180-2|CAA15981.2| 188|Caenorhabditis elegans Hypothetical
protein F43C1.3 protein.
Length = 188
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 177 CEVCAANKAL-YTCPKCEVKTCCLNCVRIHKKELEC 281
C +C K Y CP+C++ C + C R + K EC
Sbjct: 9 CGICGVEKREPYKCPRCDLLYCTIKCYR-NPKHSEC 43
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 255 RIHKKELECDGIRDRTKFIRMKDFTD 332
RI+ K L+C+ IR+ ++++K F+D
Sbjct: 95 RIYSKCLQCELIREMVNYVQIKSFSD 120
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 255 RIHKKELECDGIRDRTKFIRMKDFTD 332
RI+ K L+C+ IR+ ++++K F+D
Sbjct: 95 RIYSKCLQCELIREMVNYVQIKSFSD 120
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 255 RIHKKELECDGIRDRTKFIRMKDFTD 332
RI+ K L+C+ IR+ ++++K F+D
Sbjct: 95 RIYSKCLQCELIREMVNYVQIKSFSD 120
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +3
Query: 447 LFKLKMAARQRGIVLQFLAQNFTRHKNNTTRYNYKSNLINWRVEWI--FPNVDKEPIKYV 620
+F K + G VL +L Q N S + W++ I P D E ++
Sbjct: 157 VFNEKEGLQVLGAVLSYLIQTDKTDFVNVGLLATVSRTVGWQIANIVPIPMDDAETVEIQ 216
Query: 621 DEKCPEQKKLS 653
DE+ PE LS
Sbjct: 217 DEELPESSALS 227
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +3
Query: 447 LFKLKMAARQRGIVLQFLAQNFTRHKNNTTRYNYKSNLINWRVEWI--FPNVDKEPIKYV 620
+F K + G VL +L Q N S + W++ I P D E ++
Sbjct: 157 VFNEKEGLQVLGAVLSYLIQTDKTDFVNVGLLATVSRTVGWQIANIVPIPMDDAETVEIQ 216
Query: 621 DEKCPEQKKLS 653
DE+ PE LS
Sbjct: 217 DEELPESSALS 227
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 186 CAANKALYTCPK--CEVKT--CCLNCVRIHKKELECDGIRD 296
C + CP C+ T CLN + K+LECDG+ D
Sbjct: 1166 CLTGEDETECPPSMCDSTTHLSCLNGQKCISKQLECDGVDD 1206
>U64833-5|AAK95860.1| 402|Caenorhabditis elegans Hypothetical
protein B0507.10 protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 249 CVRIHKKELECDGIRDRTKFIR-MKDFTDTDLLSDYRLLEECARFVWGVKRDDKKRFT 419
C + E + I +R K R + DF DLLSD R+ CA D++RFT
Sbjct: 236 CNSYNSIEAQLMNIDNRMKAGRPLIDFDMEDLLSDLRMFRICASEFNAGGSTDEERFT 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,746
Number of Sequences: 27780
Number of extensions: 291294
Number of successful extensions: 692
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -