Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_L16
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 29 0.58
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 27 2.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.3
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 26 4.1
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 4.1
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 4.1
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 5.4
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 5.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.2
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 25 9.5
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.58
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = -2
Query: 415 SVVFSRRKCLQRGRNLAGMSTMNSFHCNT----AACPF*SRH---TITRRTSLHIANFHR 257
S++F+ +CL NL + + HC+ +C S H + RR S +N H
Sbjct: 79 SMIFTNNRCLSDKENLENLQNLLYLHCDLNRPHLSCELPSEHREKCLKRRNSSLSSNLHA 138
Query: 256 N 254
N
Sbjct: 139 N 139
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -2
Query: 337 CNTAACPF*SRHTITRRTSLHIANFHRNSISISIATR*SNHESSLRRTTIPN-ELQTLIT 161
C + AC ++ T R + ++N H +++S +A S SS +IPN EL +
Sbjct: 285 CGSIACSMLTKTTPHRASVDILSNLHESTVSPPMADE-SVQRSSEVSKSIPNVELSLNVN 343
Query: 160 QQITENLNLGRTNSY 116
QQ G T+S+
Sbjct: 344 QQFVS--PFGGTDSF 356
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/107 (22%), Positives = 41/107 (38%)
Frame = +2
Query: 188 DSSSSK*AFMIGLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSS 367
+SSSS+ S + + VK K SSS +S S+ A+ ++ + S
Sbjct: 104 ESSSSESESSSSESSSSESEEEVIVKTEEKKESSS-ESSSSSESEEEEEAVVKIEEKKES 162
Query: 368 KITAPLETLSTREHYRQRDSQEQEM*VFTECAEGS*LGRYPTRNDCE 508
+ E+ S+ S+ +E E E G + +D E
Sbjct: 163 SSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSE 209
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 212 FMIGLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTR--SSIAMKRVHRRHSSKIT 376
F L + + +RDR+ K+R ++ S+ R R R + +R SSKI+
Sbjct: 105 FYDSLEKKENERDRLQEKLRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKIS 161
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 230 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSI-AMKRVHRRHSSKITAPLETLS 397
R D T ++ SSSR + RS + + + + HSS + PL++LS
Sbjct: 75 RGKEDFSISTAEVTRSSLSSSRSTSSRSDKDSEKLYSNNSLSSSHSSILNGPLDSLS 131
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 281 RSSSRDSMPRSKRTRSSIAMKRVHRRHSSKIT 376
RSSS D + + RT ++ + VH H S I+
Sbjct: 265 RSSSHDHLTSTPRTPIALQRRSVHHLHDSGIS 296
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 376 RNLAGMSTMNSFHCNTAACPF*SRHTITRRTSLH 275
R + G M SF+ A CP T+ ++TS +
Sbjct: 367 RIICGYCAMESFYKKDATCPHCGNMTVKKQTSAY 400
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 546 SCRLPAMFLLVKISQSLRVGY 484
+C+LPA++LL IS++L Y
Sbjct: 54 NCKLPALYLLDSISKNLGAPY 74
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Frame = -2
Query: 631 VCRVS*LINKYYVSILN----LFKRRQTLHNSIV 542
+C+++ + Y +S+L+ LFK R TLH+S++
Sbjct: 1208 ICKLTIIGKNYTLSVLDQILKLFKGRYTLHDSLL 1241
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 257 TVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLET--LSTREHYRQRDS 427
++K++N+K+ P K+ + S + + HSS+ +PLE +ST + R +D+
Sbjct: 7 SLKLKNVKKK------PLKKKKKDSKKLAEKVQEHSSRDKSPLEENGVSTYQMLRSKDT 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,130
Number of Sequences: 5004
Number of extensions: 46674
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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