Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L16
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0131 - 15576422-15577021                                         32   0.46 
10_01_0160 - 1812213-1813790                                           29   2.4  
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679...    27   9.8  
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674...    27   9.8  
03_05_0749 - 27380979-27382100                                         27   9.8  

>02_03_0131 - 15576422-15577021
          Length = 199

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 230 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHS 364
           R  RDRDR   + R+  R   R    R ++   S +  R HRRHS
Sbjct: 34  RDHRDRDRDKERDRDRDRDRERRRGERDRKRSRSPSADRSHRRHS 78


>10_01_0160 - 1812213-1813790
          Length = 525

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 362 NVDDELVSLQYCCVSVLIAAYYHATNFAS 276
           N +DE +SL YC   +L+ A + A N A+
Sbjct: 451 NQEDEFISLSYCSERILLVAVHAADNNAA 479


>10_08_0154 +
           15266430-15266953,15267748-15267820,15267893-15267949,
           15268248-15268303,15269584-15269797,15270497-15270538,
           15270661-15270735,15270820-15270903,15271880-15271944,
           15272436-15272655,15272820-15272908,15273326-15273440,
           15273519-15273554
          Length = 549

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +2

Query: 236 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
           ++DR +   K R+  R   RDS    +R R S   +R   R   + T   E +   +  R
Sbjct: 101 EKDRSKEAEKDRSRDRDRDRDSERDRRRERDSGRERRSSSRPERRRTEEEEMVRELQKER 160

Query: 416 QRDSQEQE 439
           +R  + ++
Sbjct: 161 ERSDRNRD 168


>06_03_0732 +
           23965090-23965431,23965610-23965746,23967359-23967417,
           23968817-23970135
          Length = 618

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 350 ELVSLQYCC-VSVLIAAYYHATNFASYCEFSP*FDLYLYRYAVIQS*KLTSTNYYPKRIT 174
           EL+   +CC +++ I  Y    NFA    F+  FD+      ++   + T+  +Y    T
Sbjct: 120 ELLLWLFCCALNLYILTYETGNNFADSSGFTYSFDIANASKLMVGGERCTTAPFYKNIDT 179

Query: 173 NTNHSA 156
           +  H A
Sbjct: 180 DHRHDA 185


>03_05_0749 - 27380979-27382100
          Length = 373

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 215 MIGLPRSDRDRDRITVKIRNMKRS-SSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLET 391
           +I L R+D DRDR+  ++R+   S      +      R +  M    RR + +  A    
Sbjct: 61  VIDLARADADRDRVVAQVRSAAESVGFFQVVNHGVPARLTDGMLAAVRRFNERPAAAKAA 120

Query: 392 LSTREHYRQR 421
             TR+  R+R
Sbjct: 121 FYTRDAARRR 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,852
Number of Sequences: 37544
Number of extensions: 259085
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)