Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L16
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       33   0.20 
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      32   0.35 
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            30   1.9  
SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)                     29   2.5  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)                     28   7.6  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   28   7.6  
SB_31134| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.6  
SB_9459| Best HMM Match : Transp_Tc5_C (HMM E-Value=6.4)               28   7.6  
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)                   28   7.6  

>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 236 DRDRDRITVKIRNMKRSSSRD-----SMPRSKRTRSSIAMKRVHRRHSSKITAPLETLST 400
           DR RDR   + R+ KRS SRD     S  R +R   S   +R  R+  S+  +P      
Sbjct: 296 DRHRDRRHSRDRDRKRSRSRDRRKSRSRSRDRRRSRSRERRRDDRKRRSRERSPKRRSRE 355

Query: 401 REHYRQR 421
           RE  R R
Sbjct: 356 REESRSR 362


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +2

Query: 284 SSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHY 412
           S S DS P S R +SS + + VH+ HSSK + P    + R H+
Sbjct: 184 SYSSDSSPGSGREKSSHS-RSVHKSHSSKHSHPSSHSTNRSHH 225


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 239 RDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYRQ 418
           R R R         RS SR   PR + +RS       HRRH S+  +P +    ++  ++
Sbjct: 243 RRRSRSPSPHHRSHRSRSRSRSPRRRHSRSR---SPTHRRHRSRSHSPEKKKHKKKEKKE 299

Query: 419 RDSQEQ 436
           +D + +
Sbjct: 300 KDEKRK 305


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 266 IRNMKRSSS-RDSMPRSKRTRSSIAMKRVHRRHSSKITAPLE-TLSTREHYRQRDSQEQE 439
           +   KR SS +    +SKR  SS   +   R  SSKI+ PL+ TL  R +  Q D +  E
Sbjct: 361 MNTQKRPSSYKGDRNKSKRPASSTKTETSSRPVSSKISEPLDKTLIMRNYLSQEDERFAE 420


>SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)
          Length = 397

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 337 NETSSSSTFQQDYGPSGDTFDERTLQTT 420
           N+ SSSST Q+D     D  D R LQTT
Sbjct: 27  NKISSSSTPQEDLHKGTDCTDSRALQTT 54


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 236 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHY 412
           DRDRDR   K R+  R   RD   R ++TR   +  R       + +  +  +++ E Y
Sbjct: 415 DRDRDRDRDKERDKDRHRDRDRRDRKEKTRDRTS--RSPSESPKRSSRSIRNIASEEEY 471


>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 230 RSDRDRDRITVKIRNMKRSSSR--DSMPRSKRTRSSIAMKRVHRRHSSKITA 379
           RSDR RDR     R +KRS SR  D+   +KR RS    +R+H    S+ ++
Sbjct: 108 RSDR-RDRKPDNQRGLKRSRSRKDDTTANAKRNRSQ--YQRLHSYRGSRTSS 156


>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = -2

Query: 442 HFLFLRITLSVVFSRR---KCLQRGRNLAGMSTMNSFHCNTAACP 317
           HF+     +  + S     K L R    A     NSFHC T  CP
Sbjct: 579 HFIITAQEIKALLSEEDFNKFLNRSLATAESQAANSFHCKTPNCP 623


>SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)
          Length = 889

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 313 KTDTQQYCNETSSSSTFQQDYGPSGDTFDE 402
           +TD  Q CN+T  S T+ Q     G TFD+
Sbjct: 125 QTDDGQTCNQTDDSQTWDQT--DDGQTFDQ 152


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +2

Query: 233 SDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHY 412
           S   R + + K R+  RSSS  S  RSK  R S   +   R  SS  +  L         
Sbjct: 264 SPHSRKKKSRKHRHRSRSSSLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRS 323

Query: 413 RQRDSQEQ 436
           R R S+ +
Sbjct: 324 RSRSSERR 331


>SB_31134| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 727

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +2

Query: 221 GLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLST 400
           GLP S ++     + + N + ++     PR + + SS+A +R  R +  K    L+    
Sbjct: 138 GLPSSGKNERPSALNLNNDEETNGGAPPPRKESSSSSVAGRR--RSNCVKEVERLKKNRE 195

Query: 401 REHYRQRDSQEQEM 442
               +Q++ +EQ M
Sbjct: 196 ERRAQQQEQKEQRM 209


>SB_9459| Best HMM Match : Transp_Tc5_C (HMM E-Value=6.4)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 322 TQQYCNETSSSSTFQQDY 375
           T QYCN  SS S+F  +Y
Sbjct: 122 TSQYCNSDSSGSSFMSEY 139


>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
          Length = 531

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 239 RDRDRITVKIRNMKRSSSRDSMP-RSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
           R+RDR   + R+ K   +RD  P RS+  R      R   R   +  A       RE  R
Sbjct: 236 RERDREVERARDQKDVRARDRDPERSRDYRDGRPRNRSPERQRDQRDARPRDQREREADR 295

Query: 416 QRDSQEQE 439
            RD + +E
Sbjct: 296 SRDGRPRE 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,541,977
Number of Sequences: 59808
Number of extensions: 336372
Number of successful extensions: 1005
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)