Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L16
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   1.6  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   6.3  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   8.4  
AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.     23   8.4  
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    23   8.4  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 526 VSLSKNFAVITCWVPA*STTLSTFCEYLHFLFLRITLSVV 407
           +SL+  F ++   +P  S T+    +YL F  + +TLSVV
Sbjct: 279 LSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVV 318


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 251 DLYLYRYAVIQS*KLTSTNYYPKRI 177
           D  + RYA+IQ  +LTS++ +  R+
Sbjct: 192 DHNVVRYAIIQGHRLTSSSAHGSRV 216


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = -2

Query: 598 YVSILNLFKRRQTLHNSIVSPACNVSLSKNFAVITCWVPA*STTLSTFCEYLHFLFLRIT 419
           Y+S+L  +    +     +  +  +S +  F +I+  +P+ S  L    +YL F  + + 
Sbjct: 268 YLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMILVG 327

Query: 418 LSVVFS 401
           LSVV +
Sbjct: 328 LSVVIT 333


>AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 604 KYYVSILNLFKRRQTLHNSIVSPACNVSLSK 512
           KY+ S  N+   ++ +  S V   CNV L+K
Sbjct: 375 KYFYSATNIVSAQKYITISHVGLLCNVLLTK 405


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +2

Query: 395 STREHYRQRDSQEQEM*VFTECAEGS*LGRYPTRNDCEIFTKRNIAGRRHD 547
           S+ +H++Q+  Q ++M   +  + G+ L      +   +FT  +I G   D
Sbjct: 18  SSTDHHQQQQQQHEDMGCSSAGSTGTTLPTDARPSFASVFTIESILGLNQD 68


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,497
Number of Sequences: 2352
Number of extensions: 12056
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)