Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_L16
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 33 0.23
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 33 0.23
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 33 0.23
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 33 0.23
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 30 1.2
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 30 1.2
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 30 1.2
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 30 1.2
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 30 1.2
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81527-9|CAI91172.1| 577|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81527-8|CAI91171.1| 537|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81527-7|CAI91170.1| 517|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 29 3.8
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 29 3.8
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 29 3.8
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 28 5.0
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 28 5.0
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 6.6
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 27 8.7
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 224 LPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTR 403
+ R+D DR+R + R+ R SR PR R+R ++ R H S+ + R
Sbjct: 595 MKRTDEDRERKRHRKRSRSRRRSRSCSPRD-RSREHKKSRKSGRHHRSRSRSSSRDRHRR 653
Query: 404 EHYRQRD 424
R RD
Sbjct: 654 NRSRSRD 660
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 224 LPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTR 403
+ R+D DR+R + R+ R SR PR R+R ++ R H S+ + R
Sbjct: 681 MKRTDEDRERKRHRKRSRSRRRSRSCSPRD-RSREHKKSRKSGRHHRSRSRSSSRDRHRR 739
Query: 404 EHYRQRD 424
R RD
Sbjct: 740 NRSRSRD 746
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 224 LPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTR 403
+ R+D DR+R + R+ R SR PR R+R ++ R H S+ + R
Sbjct: 683 MKRTDEDRERKRHRKRSRSRRRSRSCSPRD-RSREHKKSRKSGRHHRSRSRSSSRDRHRR 741
Query: 404 EHYRQRD 424
R RD
Sbjct: 742 NRSRSRD 748
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 224 LPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTR 403
+ R+D DR+R + R+ R SR PR R+R ++ R H S+ + R
Sbjct: 681 MKRTDEDRERKRHRKRSRSRRRSRSCSPRD-RSREHKKSRKSGRHHRSRSRSSSRDRHRR 739
Query: 404 EHYRQRD 424
R RD
Sbjct: 740 NRSRSRD 746
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 30.7 bits (66), Expect = 0.94
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 221 GLPR-SDRDRDRITVKIRNMKRSSSRDSMPRSKRTRS-SIAMKRVHRRHSSKITAPLETL 394
GL R +DRDRDR + R+ +R S R +R RS S RR S+ +
Sbjct: 76 GLDRGNDRDRDRERERDRDRRRDRRERSGSRDRRRRSRSRDRDGGRRRDRSRSRDRRDRN 135
Query: 395 STREHYRQRDSQEQE 439
R+ R DS +E
Sbjct: 136 DDRKRDRNEDSDNEE 150
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +2
Query: 182 VWDSSSSK*AFMIGLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKR 346
V +S S +F G PR D V I + + S D P + R RSSI M+R
Sbjct: 583 VSESISELPSFAGGKPRRKTDDKPKKVSIAPVSTNKSSDDEPSTPRRRSSIDMRR 637
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +2
Query: 182 VWDSSSSK*AFMIGLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKR 346
V +S S +F G PR D V I + + S D P + R RSSI M+R
Sbjct: 583 VSESISELPSFAGGKPRRKTDDKPKKVSIAPVSTNKSSDDEPSTPRRRSSIDMRR 637
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 526 VSLSKNFAVITCWVPA*STTLSTFCEYLHFLFLRITLSVV 407
V+L+ F ++T +PA S TL +YL F + +TLSVV
Sbjct: 297 VALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLSVV 336
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 526 VSLSKNFAVITCWVPA*STTLSTFCEYLHFLFLRITLSVV 407
V+L+ F ++T +PA S TL +YL F + +TLSVV
Sbjct: 297 VALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLSVV 336
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 526 VSLSKNFAVITCWVPA*STTLSTFCEYLHFLFLRITLSVV 407
V+L+ F ++T +PA S TL +YL F + +TLSVV
Sbjct: 297 VALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLSVV 336
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 224 LPRSDRDRDRITVKIRNMKRSSS-RDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLST 400
+PR D ++N R+SS RD R++R + R RR S ++ + + S+
Sbjct: 460 VPRPSAISDEWNAFLQNKDRNSSRRDHKDRTRRKDRHDSRSR--RRRDSSSSSSMSSSSS 517
Query: 401 REHYRQRDSQEQE 439
E R+R +E+E
Sbjct: 518 DEDERRRKRREKE 530
>Z81527-9|CAI91172.1| 577|Caenorhabditis elegans Hypothetical
protein F35E12.7d protein.
Length = 577
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 151 TENLNLGRTNSYY*VDNYFKIITFTSTLFNVNLKLEALISIKNIDH 14
T NL T +Y + NY ++I T T FN L+ + +++ D+
Sbjct: 117 TGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>Z81527-8|CAI91171.1| 537|Caenorhabditis elegans Hypothetical
protein F35E12.7c protein.
Length = 537
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 151 TENLNLGRTNSYY*VDNYFKIITFTSTLFNVNLKLEALISIKNIDH 14
T NL T +Y + NY ++I T T FN L+ + +++ D+
Sbjct: 117 TGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>Z81527-7|CAI91170.1| 517|Caenorhabditis elegans Hypothetical
protein F35E12.7b protein.
Length = 517
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 151 TENLNLGRTNSYY*VDNYFKIITFTSTLFNVNLKLEALISIKNIDH 14
T NL T +Y + NY ++I T T FN L+ + +++ D+
Sbjct: 117 TGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical
protein F35E12.7a protein.
Length = 739
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 151 TENLNLGRTNSYY*VDNYFKIITFTSTLFNVNLKLEALISIKNIDH 14
T NL T +Y + NY ++I T T FN L+ + +++ D+
Sbjct: 117 TGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 118 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 177
Query: 416 QRDSQE 433
++ QE
Sbjct: 178 NQEDQE 183
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 409 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 468
Query: 416 QRDSQE 433
++ QE
Sbjct: 469 NQEDQE 474
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 424 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 483
Query: 416 QRDSQE 433
++ QE
Sbjct: 484 NQEDQE 489
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 424 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 483
Query: 416 QRDSQE 433
++ QE
Sbjct: 484 NQEDQE 489
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 118 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 177
Query: 416 QRDSQE 433
++ QE
Sbjct: 178 NQEDQE 183
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 409 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 468
Query: 416 QRDSQE 433
++ QE
Sbjct: 469 NQEDQE 474
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 424 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 483
Query: 416 QRDSQE 433
++ QE
Sbjct: 484 NQEDQE 489
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 DRITVKIRNMKRSS----SRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DR + N K+ + +R S P SK + R + PL+T S+ EH+
Sbjct: 424 DRFNLYFINRKKENIEVAARSSSPTSKSENDQGSSSPSSSRDRQNLHDPLQTRSSVEHHT 483
Query: 416 QRDSQE 433
++ QE
Sbjct: 484 NQEDQE 489
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 230 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSK 370
R +RDRDR + R+ R RD +++R + +R RR +
Sbjct: 1088 RKERDRDRDRDRDRDEDREKVRDKEDKAQREKDKKEKERERRRQRDR 1134
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 230 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSK 370
R +RDRDR + R+ R RD +++R + +R RR +
Sbjct: 1088 RKERDRDRDRDRDRDEDREKVRDKEDKAQREKDKKEKERERRRQRDR 1134
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 236 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSK 370
DR RDR + R+ R SR+ +RTRS + R SK
Sbjct: 118 DRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSK 162
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 236 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DRDRDR + R+ +RS SRD R RS ++ RR S+ + +R R
Sbjct: 296 DRDRDRDRRRSRD-RRSRSRDRDRDRDRKRSRSRDRK--RRSRSRDNKDRDRKRSRSRDR 352
Query: 416 QRDSQEQE 439
+R S+ ++
Sbjct: 353 RRRSKSRD 360
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 236 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYR 415
DRDRDR + R+ +RS SRD R RS ++ RR S+ + +R R
Sbjct: 296 DRDRDRDRRRSRD-RRSRSRDRDRDRDRKRSRSRDRK--RRSRSRDNKDRDRKRSRSRDR 352
Query: 416 QRDSQEQE 439
+R S+ ++
Sbjct: 353 RRRSKSRD 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,630
Number of Sequences: 27780
Number of extensions: 255105
Number of successful extensions: 866
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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