Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L16
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.36 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -2

Query: 598 YVSILNLFKRRQTLHNSIVSPACNVSLSKNFAVITCWVPA*STTLSTFCEYLHFLFLRIT 419
           ++S+L  +    +     +S +  +SL+  F ++   +P  S T+    +YL F  + +T
Sbjct: 252 FLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVT 311

Query: 418 LSVV 407
           LSVV
Sbjct: 312 LSVV 315


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 285 LRFILRIFTVIRSLSLSLRGNPIMKAHFDELLSQTN 178
           ++ ++ I  ++  L     GNP  K  +D+LLS  N
Sbjct: 2   MKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYN 37


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 261 TVIRSLSLSL-RGNPIMKAHFDELLSQTN 178
           T+I  LS  +  GNP  K  +D+LLS  N
Sbjct: 5   TIILILSARICHGNPDAKRLYDDLLSNYN 33



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 529 NVSLSKN--FAVITCWVPA*STTLSTFCEYLHFLFLRITLSVVFS 401
           N+ LS+   F +I+  +P+ S  L    +YL F  + + LSVV +
Sbjct: 272 NILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMILVGLSVVIT 316


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 281 RSSSRDSMPRSKRTRSSIAMKRVHRRHSSKITAPLETLSTREHYRQRDSQEQE 439
           R  S++   R K        +R  R HS ++T+  +    ++  +Q+D Q+Q+
Sbjct: 57  RQHSKNEQQR-KEMEQMREREREQREHSDRVTS--QQQQQQQQQQQQDQQQQQ 106


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 237 SLRGNPIMKAHFDELLSQTN 178
           ++ GNP  K  +D+LLS  N
Sbjct: 22  AVAGNPDAKRLYDDLLSNYN 41


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 237 SLRGNPIMKAHFDELLSQTN 178
           ++ GNP  K  +D+LLS  N
Sbjct: 22  AVAGNPDAKRLYDDLLSNYN 41


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 434 VLANHVVCSVLSSKVSP 384
           ++A H+VC +L S + P
Sbjct: 364 IVATHLVCGILGSILVP 380


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 526 VSLSKNFAVITCWVPA*STTLSTFCEYLHFLFLRITLSV 410
           +SL+  F ++   +P  S  +    +YL F  + +TLS+
Sbjct: 289 LSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSI 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,510
Number of Sequences: 438
Number of extensions: 2963
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)