Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L09
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-4|CAC35907.1|  175|Caenorhabditis elegans Hypothetical ...    44   7e-05
AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin...    28   5.0  

>AL161712-4|CAC35907.1|  175|Caenorhabditis elegans Hypothetical
           protein Y66D12A.7 protein.
          Length = 175

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +3

Query: 171 VPSNPV-STVQNEDKNKIC-IDPSTITLLERLSLVKYDTPKGIKVLEDSITFANKILHIN 344
           VP  P  S +Q    + +  ID   I  LERLSLV++D+ + +  L  SI  A ++  ++
Sbjct: 28  VPDEPYDSKIQESQLSPMPQIDAKLINHLERLSLVRFDSEQAVANLRSSIRVAKRLELVD 87

Query: 345 TDNIEPLYTTLENE 386
            + +EP++T  E++
Sbjct: 88  VEGVEPMHTVWEDQ 101



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 584 KDILKNATVKEDDYFVAPTGNI 649
           +++ +NA+++ DD+FV P GN+
Sbjct: 117 EEVFRNASLRFDDFFVTPPGNL 138


>AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin
           protein 71 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 112 LSP*IVLQFKEFCPRIIVQKYLPIRSVQY 198
           L P  V QF +F   + VQ +LP+ +VQY
Sbjct: 364 LPPMSVPQFDDFLIMVSVQSHLPVSNVQY 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,922,908
Number of Sequences: 27780
Number of extensions: 243965
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)