Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_L03
(651 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep: GA1... 149 6e-35
UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila melanog... 146 3e-34
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 116 4e-25
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 103 3e-21
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 99 1e-19
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 95 2e-18
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 89 9e-17
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 89 1e-16
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 85 2e-15
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 84 3e-15
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 83 6e-15
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 82 1e-14
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 78 2e-13
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 77 5e-13
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 77 5e-13
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 76 6e-13
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 75 1e-12
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 75 2e-12
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 75 2e-12
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 75 2e-12
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 74 3e-12
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 74 3e-12
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 74 3e-12
UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2; Thei... 74 3e-12
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 73 5e-12
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 73 6e-12
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 73 8e-12
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 73 8e-12
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 72 1e-11
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 72 1e-11
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 72 1e-11
UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protei... 71 2e-11
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 71 2e-11
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 71 2e-11
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 71 2e-11
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 70 4e-11
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 70 4e-11
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 70 6e-11
UniRef50_A3EXS4 Cluster: RNA-binding protein LIN-28-like protein... 70 6e-11
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 70 6e-11
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 69 1e-10
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 69 1e-10
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-10
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 68 2e-10
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 68 2e-10
UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;... 67 3e-10
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 67 3e-10
UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein; ... 67 4e-10
UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12; Gam... 67 4e-10
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 66 5e-10
UniRef50_A0YBV1 Cluster: CspA-like protein; n=17; Proteobacteria... 66 7e-10
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 66 9e-10
UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31; Bac... 66 9e-10
UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10; Bac... 65 1e-09
UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator Cs... 65 2e-09
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 64 2e-09
UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288; Ba... 63 5e-09
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 63 6e-09
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 63 6e-09
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 63 6e-09
UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula b... 62 1e-08
UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;... 62 1e-08
UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2; Proteobac... 61 2e-08
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 61 2e-08
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 61 2e-08
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 61 2e-08
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 61 3e-08
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 61 3e-08
UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12; Gammapro... 60 3e-08
UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter ... 60 3e-08
UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein; ... 60 3e-08
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 60 5e-08
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 60 6e-08
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 60 6e-08
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 60 6e-08
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 59 8e-08
UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter ... 59 1e-07
UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6; Gammaproteobac... 58 1e-07
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 58 1e-07
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 58 2e-07
UniRef50_Q6YPQ4 Cluster: Cold shock protein; n=3; Firmicutes|Rep... 58 2e-07
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 58 2e-07
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 58 2e-07
UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9; Chlo... 57 3e-07
UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3; Acti... 57 3e-07
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 57 3e-07
UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4; Brucella|... 57 4e-07
UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putati... 57 4e-07
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 57 4e-07
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 57 4e-07
UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular organ... 56 6e-07
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 56 6e-07
UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein; ... 56 6e-07
UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain ... 56 7e-07
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 56 1e-06
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 56 1e-06
UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium ... 56 1e-06
UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38; A... 56 1e-06
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 55 1e-06
UniRef50_Q8D046 Cluster: Cold shock protein; n=14; Enterobacteri... 55 1e-06
UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precurs... 55 1e-06
UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein; ... 55 1e-06
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12; Bac... 55 1e-06
UniRef50_Q7VLQ6 Cluster: Cold shock-like protein CspD; n=6; Prot... 55 2e-06
UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7; Pr... 55 2e-06
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 55 2e-06
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 55 2e-06
UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24... 54 2e-06
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 54 2e-06
UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:... 54 3e-06
UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1; C... 54 3e-06
UniRef50_Q834D5 Cluster: Cold-shock domain family protein; n=1; ... 53 7e-06
UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6; ... 53 7e-06
UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7; Flavobacterial... 53 7e-06
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 52 9e-06
UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2; Rick... 52 9e-06
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 52 1e-05
UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc me... 52 2e-05
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 51 2e-05
UniRef50_Q82ZV8 Cluster: Cold-shock domain family protein; n=7; ... 51 2e-05
UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein; ... 51 2e-05
UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep... 51 3e-05
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_Q8G880 Cluster: Cold shock protein; n=3; Bifidobacteriu... 50 4e-05
UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein; ... 50 4e-05
UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomon... 50 4e-05
UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein; ... 50 5e-05
UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:... 50 5e-05
UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1; Nocar... 50 6e-05
UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2; Saliniba... 50 6e-05
UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain ... 50 6e-05
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 49 8e-05
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 49 8e-05
UniRef50_Q3W076 Cluster: Cold-shock DNA-binding domain; n=2; Fra... 49 1e-04
UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein; ... 49 1e-04
UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1; ... 49 1e-04
UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein; ... 48 1e-04
UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein; ... 48 1e-04
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 48 1e-04
UniRef50_Q1VQ89 Cluster: Cold shock protein; n=8; Bacteroidetes|... 48 2e-04
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 48 3e-04
UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma proteoba... 48 3e-04
UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1; C... 48 3e-04
UniRef50_A6CF18 Cluster: Probable cold shock protein scoF; n=1; ... 48 3e-04
UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein; ... 47 3e-04
UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1; Sacc... 47 3e-04
UniRef50_A2TNS0 Cluster: Cold shock protein; n=4; Bacteroidetes|... 47 3e-04
UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7; Halobacteriace... 47 3e-04
UniRef50_Q56922 Cluster: Major cold shock protein; n=31; Enterob... 47 3e-04
UniRef50_Q9Y534 Cluster: Cold shock domain-containing protein C2... 47 3e-04
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 47 5e-04
UniRef50_Q2RWM8 Cluster: Cold-shock DNA-binding domain protein; ... 47 5e-04
UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein; ... 47 5e-04
UniRef50_A0PKE1 Cluster: DNA-binding protein; n=1; Mycobacterium... 47 5e-04
UniRef50_Q48493 Cluster: Major cold shock protein; n=50; Bacteri... 47 5e-04
UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas mobi... 46 6e-04
UniRef50_A0Z255 Cluster: Cold shock protein, CspA family-like pr... 46 6e-04
UniRef50_Q9Y2V2 Cluster: Calcium-regulated heat stable protein 1... 46 6e-04
UniRef50_A2U2L8 Cluster: Cold shock protein; n=3; Bacteroidetes|... 46 8e-04
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 46 0.001
UniRef50_Q9ZHW6 Cluster: Major cold shock protein; n=8; Bacteria... 46 0.001
UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1; D... 45 0.001
UniRef50_UPI000050F90E Cluster: COG1278: Cold shock proteins; n=... 45 0.002
UniRef50_Q5P4M3 Cluster: Probable cold shock family protein; n=1... 45 0.002
UniRef50_Q1ZUW9 Cluster: Predicted membrane protein; n=3; Vibrio... 45 0.002
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 45 0.002
UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroid... 44 0.002
UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10; Streptococc... 44 0.002
UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein; ... 44 0.002
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 44 0.002
UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein; ... 44 0.003
UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia sola... 44 0.003
UniRef50_Q4Q8I6 Cluster: RNA binding protein rbp16, putative; n=... 44 0.003
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 44 0.004
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 44 0.004
UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein; ... 44 0.004
UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2; Flexibac... 44 0.004
UniRef50_Q9RBP7 Cluster: Cold shock protein 7.4; n=2; Rhodococcu... 43 0.006
UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.006
UniRef50_Q51929 Cluster: Major cold shock protein; n=74; Bacteri... 43 0.007
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 42 0.010
UniRef50_Q82WG3 Cluster: Cold-shock DNA-binding domain; n=5; Bac... 42 0.010
UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1; ... 42 0.010
UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease ... 42 0.013
UniRef50_Q1B3F5 Cluster: Cold-shock DNA-binding domain protein; ... 42 0.013
UniRef50_A1U4X1 Cluster: Putative uncharacterized protein; n=1; ... 42 0.013
UniRef50_A4VQF2 Cluster: Cold-shock DNA-binding domain protein; ... 42 0.017
UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:... 42 0.017
UniRef50_Q8PK43 Cluster: Integral membrane protein; n=5; Proteob... 41 0.022
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 41 0.022
UniRef50_A3XVA6 Cluster: Putative uncharacterized protein; n=1; ... 41 0.030
UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1; Met... 41 0.030
UniRef50_A0D610 Cluster: Chromosome undetermined scaffold_39, wh... 41 0.030
UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein; ... 40 0.039
UniRef50_Q03QI4 Cluster: Cold shock protein; n=4; Lactobacillus|... 40 0.039
UniRef50_Q0RYK4 Cluster: Probable cold shock protein CspA; n=1; ... 40 0.052
UniRef50_UPI0000D57810 Cluster: PREDICTED: similar to CG9705-PA,... 40 0.068
UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein; ... 40 0.068
UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3; Plas... 40 0.068
UniRef50_O33052 Cluster: Small cold-shock protein; n=7; Coryneba... 39 0.090
UniRef50_Q4DP50 Cluster: Putative uncharacterized protein; n=2; ... 39 0.090
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 39 0.12
UniRef50_Q607Y7 Cluster: Cold-shock DNA-binding domain protein; ... 39 0.12
UniRef50_Q5Z0N3 Cluster: Putative cold shock protein; n=1; Nocar... 39 0.12
UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1; R... 39 0.12
UniRef50_Q024L3 Cluster: Cold-shock DNA-binding domain protein; ... 39 0.12
UniRef50_A6W4V4 Cluster: Putative cold-shock DNA-binding domain ... 39 0.12
UniRef50_Q9HP26 Cluster: Cold shock protein; n=11; Halobacteriac... 39 0.12
UniRef50_A4KQU6 Cluster: Cold shock protein; n=7; Francisella tu... 38 0.21
UniRef50_A3X259 Cluster: Cold shock protein; n=1; Nitrobacter sp... 38 0.21
UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp... 38 0.28
UniRef50_A1SNP5 Cluster: Cold-shock protein, DNA-binding; n=26; ... 38 0.28
UniRef50_UPI00006CB6F6 Cluster: ''''Cold-shock'''' DNA-binding d... 37 0.36
UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter viola... 37 0.36
UniRef50_Q019N2 Cluster: Chromosome 05 contig 1, DNA sequence; n... 37 0.36
UniRef50_UPI00006CB81E Cluster: conserved hypothetical protein; ... 37 0.48
UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1; Hy... 37 0.48
UniRef50_A4SJX6 Cluster: Cold-shock protein, DNA-binding; n=2; A... 37 0.48
UniRef50_A3WZM6 Cluster: Cold shock DNA binding protein; n=1; Ni... 37 0.48
UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, wh... 37 0.48
UniRef50_Q0KYJ4 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.64
UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1; ... 36 0.64
UniRef50_UPI000150A0B6 Cluster: hypothetical protein TTHERM_0034... 36 0.84
UniRef50_A0DVR0 Cluster: Chromosome undetermined scaffold_66, wh... 36 0.84
UniRef50_Q72AY2 Cluster: Cold shock domain protein; n=3; Desulfo... 35 1.5
UniRef50_Q2RY07 Cluster: Cold-shock DNA-binding domain protein; ... 35 1.5
UniRef50_Q1K0A5 Cluster: Cold-shock DNA-binding domain protein; ... 35 1.5
UniRef50_Q4GYD7 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_UPI0000E480B9 Cluster: PREDICTED: hypothetical protein;... 35 1.9
UniRef50_Q8EIU8 Cluster: Cold shock domain family protein; n=7; ... 35 1.9
UniRef50_Q5PBP1 Cluster: Cold shock protein; n=7; Anaplasmatacea... 35 1.9
UniRef50_Q7WXG5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.9
UniRef50_A0YEF6 Cluster: Putative uncharacterized protein; n=1; ... 35 1.9
UniRef50_Q15SJ6 Cluster: Cold-shock DNA-binding domain protein; ... 34 2.6
UniRef50_A1TSW1 Cluster: Cold-shock DNA-binding domain protein; ... 34 2.6
UniRef50_A5KIG0 Cluster: Putative uncharacterized protein; n=2; ... 34 3.4
UniRef50_Q9WDD3 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q8D4D0 Cluster: Predicted membrane protein; n=3; Vibrio... 33 4.5
UniRef50_Q84IJ3 Cluster: Cold shock protein; n=1; Janthinobacter... 33 4.5
UniRef50_Q4AG52 Cluster: Cold-shock protein, DNA-binding; n=3; B... 33 4.5
UniRef50_Q248G5 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 33 4.5
UniRef50_Q48AJ7 Cluster: Cold-shock DNA-binding domain family pr... 33 5.9
UniRef50_Q93NE9 Cluster: CspA; n=2; Neisseria gonorrhoeae|Rep: C... 33 5.9
UniRef50_Q1ZDW9 Cluster: Cold-shock DNA-binding domain protein; ... 33 5.9
UniRef50_A6FGU4 Cluster: Cold shock domain family protein; n=1; ... 33 5.9
UniRef50_A0NS44 Cluster: Cold-shock DNA-binding domain protein; ... 33 5.9
UniRef50_Q8A6J7 Cluster: Cold shock protein, putative DNA-bindin... 33 7.8
UniRef50_Q88Q61 Cluster: Cold shock DNA-binding domain protein; ... 33 7.8
UniRef50_Q0RHY5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_Q5DAJ0 Cluster: SJCHGC09481 protein; n=1; Schistosoma j... 33 7.8
UniRef50_Q4DSM4 Cluster: Putative uncharacterized protein; n=2; ... 33 7.8
>UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep:
GA14466-PA - Drosophila pseudoobscura (Fruit fly)
Length = 168
Score = 149 bits (361), Expect = 6e-35
Identities = 65/96 (67%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV++M GFRSLG+ EEVEFEC + +G
Sbjct: 18 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIKMSGFRSLGEQEEVEFECHRTARG 77
Query: 483 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCG 590
LEATRV+G G +CHGS RP R R++RCYNCG
Sbjct: 78 LEATRVSGRAGDECHGSTYRPRINRRTRRMRCYNCG 113
Score = 47.6 bits (108), Expect = 3e-04
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 589 GEFANHIAAKCXIGPQPKRCH 651
GEFANHIA++C +GPQPKRCH
Sbjct: 113 GEFANHIASECALGPQPKRCH 133
>UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila
melanogaster|Rep: Lin-28 homolog - Drosophila
melanogaster (Fruit fly)
Length = 195
Score = 147 bits (355), Expect = 3e-34
Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV+QM GFRSLG+ EEVEFEC+ + +G
Sbjct: 36 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG 95
Query: 483 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCG 590
LEATRV+ +G C GS RP R R++RCYNCG
Sbjct: 96 LEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCG 131
Score = 47.6 bits (108), Expect = 3e-04
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 589 GEFANHIAAKCXIGPQPKRCH 651
GEFANHIA++C +GPQPKRCH
Sbjct: 131 GEFANHIASECALGPQPKRCH 151
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 116 bits (280), Expect = 4e-25
Identities = 54/92 (58%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKESDKGLEAT 494
RG+CKWF++AK +GF+TPDDG DVFVHQ V++M G+RSL +EEVE++ + S+KG EAT
Sbjct: 64 RGKCKWFSLAKCYGFLTPDDGSGDVFVHQRVIKMVGYRSLDTNEEVEYKFQFSEKGREAT 123
Query: 495 RVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCG 590
VTG +G DC GS RR K R RC+NCG
Sbjct: 124 TVTGVDGGDCKGSKRRLRPKYRRTANRCFNCG 155
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 103 bits (248), Expect = 3e-21
Identities = 58/104 (55%), Positives = 68/104 (65%), Gaps = 12/104 (11%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFIT-------PDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESD 476
G CKWFNV G+GFI+ P D DVFVHQS L M GFRSL + E VEF K+S
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSS 91
Query: 477 KGLEATRVTGPNGTDCHGSDRRP----LSKIRFRKIRCYNCGGV 596
KGLE+ RVTGP G+ C GS+RRP L K + + RCYNCGG+
Sbjct: 92 KGLESIRVTGPGGSPCLGSERRPKGKTLQKRKPKGDRCYNCGGL 135
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 98.7 bits (235), Expect = 1e-19
Identities = 49/93 (52%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQ---DVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
G CKWFN +G+GFITPD Q DVFVHQS + M GFRSL + + V+F K S KGLE
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWYKPSKKGLE 88
Query: 489 ATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNC 587
A +V GP G G++R S+ R+ RCYNC
Sbjct: 89 AVKVVGPGGEKLVGAERTKKSRPSDRRSRCYNC 121
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 94.7 bits (225), Expect = 2e-18
Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKESDKG-LEAT 494
G CKWF+ KG+GFITPDDG +D+FVHQ +++ GFRSL DE VE+E + DKG +A
Sbjct: 13 GVCKWFDSTKGFGFITPDDGSEDIFVHQQNIKVEGFRSLAQDERVEYEIETDDKGRRKAV 72
Query: 495 RVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGG 593
V+GPNG G RR + R R +R GG
Sbjct: 73 NVSGPNGAPVKGDRRRGRGRGRGRGMRGRGRGG 105
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 89.0 bits (211), Expect = 9e-17
Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN+ KG+GFIT DDGG+DVFVHQS ++ G+RSL + E V+ SDKG A
Sbjct: 485 GSVKWFNLIKGFGFITRDDGGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSDKGKVAIC 544
Query: 498 VTGPNGTDCHGSDRRPLSKIRFRKIR--CYNC 587
VT P G + G+ R+ K RK C+NC
Sbjct: 545 VTSPGGGNVKGASRKNRVKKGARKYTSLCFNC 576
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 88.6 bits (210), Expect = 1e-16
Identities = 42/80 (52%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG-- 482
K G CKWFN KG+GF+TPDDG D+FVHQS + GFRSL + E VEF ++
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHADGFRSLAEGEPVEFSVITDERSGK 62
Query: 483 LEATRVTGPNGTDCHGSDRR 542
L+A VTGPNG G+ RR
Sbjct: 63 LKAADVTGPNGAAVRGAPRR 82
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 84.6 bits (200), Expect = 2e-15
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 491
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 114
Query: 492 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCG 590
V+G G GS PL + + +RC+ CG
Sbjct: 115 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG 148
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 83.8 bits (198), Expect = 3e-15
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE-VEFECKESDKG 482
G + +G KWFNV KG+GFI+PDDGG+D+FVHQS ++ G+RSL + + VEFE D G
Sbjct: 2 GERVKGTVKWFNVTKGFGFISPDDGGEDLFVHQSAIKSDGYRSLNENDAVEFEIITGDDG 61
Query: 483 -LEATRVTGPNGTDCHGSDR 539
+A+ VT P G G R
Sbjct: 62 RTKASDVTAPGGGALSGGSR 81
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 83.0 bits (196), Expect = 6e-15
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+ RG+ KWFN KG+GFI P DG +++FVHQ+ + GFRS+ + EEVE++ ++D +
Sbjct: 4 RARGKVKWFNATKGFGFIIPHDGSEEIFVHQTGISCAGFRSVWEGEEVEYDVDDTDFAPK 63
Query: 489 ATRVTGPNGTDCHGSDRR 542
A VTGP+G G+ RR
Sbjct: 64 AVNVTGPDGVAVKGAPRR 81
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE-VEFECKESDKG 482
G +R+G KWF+ KG+GFITP DGG D+FVHQS ++ GFRSL EE VEF+ + + G
Sbjct: 12 GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71
Query: 483 L-EATRVTGPNGTDCHGS 533
+A V+GP+G G+
Sbjct: 72 RPKAIEVSGPDGAPVQGN 89
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 77.8 bits (183), Expect = 2e-13
Identities = 47/117 (40%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Frame = +3
Query: 234 GGKAEMQFPLPVSRXXXXXXXXXXGVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL 413
G A PLP R K G KWFNV G+GFI +D +DVFVHQ+ +
Sbjct: 61 GTPASAPGPLPPCRRRRGDGEEVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 120
Query: 414 QMPGFR----SLGD-EEVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRK 569
+ R S+GD E VEF+ E +KG EA VTGP+G GS R + R+R+
Sbjct: 121 KKNNPRKYLASVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS-RYAADRRRYRR 176
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 76.6 bits (180), Expect = 5e-13
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG-LEA 491
+G KWF+ KG+GFITPDDGG+D+FVHQS L+ G+RSL D + VEF + G +A
Sbjct: 7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKA 66
Query: 492 TRVTGPNG 515
VT P G
Sbjct: 67 VNVTAPGG 74
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 76.6 bits (180), Expect = 5e-13
Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQ--MPG-FRSLG-DEEVEFECKESDKG 482
R G+ KW+NV KG+GFI DD +DVFVHQS + PG +SLG DE+V F+ + KG
Sbjct: 3 RGGKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGSKG 62
Query: 483 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIR 575
EA VTGPNG GS P + + R R
Sbjct: 63 NEAMNVTGPNGDAVLGSKFAPNNDFQNRNNR 93
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 76.2 bits (179), Expect = 6e-13
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKGL 485
G KWFNV G+GFI DD +DVFVHQ+ + RS+GD E+VEF+ E +KG
Sbjct: 35 GTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGN 94
Query: 486 EATRVTGPNGTDCHGSDRRPLSKIRFRK 569
EA VTGP G++ GS + + RFR+
Sbjct: 95 EAANVTGPEGSNVQGS-KYAADRRRFRR 121
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 74.9 bits (176), Expect = 1e-12
Identities = 39/80 (48%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKGL 485
G KWFNV G+GFI +D +DVFVHQ+ ++ RS+GD E VEF+ E +KG
Sbjct: 96 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGA 155
Query: 486 EATRVTGPNGTDCHGSDRRP 545
EAT VTGP G GS P
Sbjct: 156 EATNVTGPGGVPVKGSRYAP 175
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 74.5 bits (175), Expect = 2e-12
Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKG 482
+G KWFNV G+GFI +D +DVFVHQ+ ++ RS+GD E VEF+ E+ KG
Sbjct: 4 QGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKG 63
Query: 483 LEATRVTGPNGTDCHGSDRRPLSKIRFRK 569
EA VTGP G GS P +K RFR+
Sbjct: 64 SEAANVTGPGGIPVKGSRYAP-NKRRFRR 91
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 74.5 bits (175), Expect = 2e-12
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKGL 485
G KWFNV G+GFI +D +DVFVHQ+ ++ RS+GD E VEF+ E+ KG
Sbjct: 23 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAKGS 82
Query: 486 EATRVTGPNGTDCHGSDRRPLSKIRFRK 569
EA VTGP G GS P +K RFR+
Sbjct: 83 EAANVTGPGGIPVKGSRYAP-NKRRFRR 109
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 74.5 bits (175), Expect = 2e-12
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKGL 485
G KWFNV G+GFI +D +DVFVHQ+ ++ RS+GD E VEF+ E +KG
Sbjct: 93 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 152
Query: 486 EATRVTGPNGTDCHGSDRRPLSKIRFRK 569
EA VTGP+G GS R + R+R+
Sbjct: 153 EAANVTGPDGVPVEGS-RYAADRRRYRR 179
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 74.1 bits (174), Expect = 3e-12
Identities = 40/70 (57%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
Frame = +3
Query: 405 SVLQMPGFRSLGD-EEVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRK---- 569
S L M GFRSL + E+VEF K+S KGLE+ RVTGP G C GS+RRP KI +K
Sbjct: 103 SKLVMEGFRSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGSERRPKGKIPLQKRKPK 162
Query: 570 -IRCYNCGGV 596
RCYNCGG+
Sbjct: 163 GDRCYNCGGL 172
Score = 39.5 bits (88), Expect = 0.068
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFI-------TPDDGGQDVFVHQSV 410
G CKWFNV G+GFI +P D DVFVHQSV
Sbjct: 9 GFCKWFNVRMGFGFISMTHSEGSPVDPPLDVFVHQSV 45
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 74.1 bits (174), Expect = 3e-12
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL--QMPG--FRSLGD-EEVEFECKESD 476
K +G KWFNV G+GFI D +D+FVHQ+ + P RSLGD EEV F+ E
Sbjct: 20 KVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGS 79
Query: 477 KGLEATRVTGPNGTDCHGS 533
KGLEA VTGP+G GS
Sbjct: 80 KGLEAASVTGPDGGPVQGS 98
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 73.7 bits (173), Expect = 3e-12
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN AKG+GFI DDGG DVF H + +Q GFR+L + ++VEFE ++ KGL+A
Sbjct: 4 GTVKWFNDAKGFGFIAQDDGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPKGLQAEN 63
Query: 498 V 500
V
Sbjct: 64 V 64
>UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2;
Theileria|Rep: Cold shock protein, putative - Theileria
annulata
Length = 95
Score = 73.7 bits (173), Expect = 3e-12
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G CKWFN KG+GFIT ++ G+DVFVHQS + GFRSL + E+VE E + +A
Sbjct: 6 GVCKWFNNKKGYGFITLEN-GEDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRKKAIH 64
Query: 498 VTGPNGTDCHGSD 536
VTGPNGT G++
Sbjct: 65 VTGPNGTHVTGTN 77
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 73.3 bits (172), Expect = 5e-12
Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN AKG+GFIT D GG+DVF H S + M GFR+L + ++VEFE KGL+A
Sbjct: 4 GTVKWFNDAKGFGFITQDGGGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPKGLQAQN 63
Query: 498 V 500
V
Sbjct: 64 V 64
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 72.9 bits (171), Expect = 6e-12
Identities = 44/90 (48%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI DD +DVFVHQS + RS+GD E VEF+ E
Sbjct: 23 KVSGTVKWFNVKNGYGFINRDDTKEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGT 82
Query: 477 KGLEATRVTGPNGTDCHGSDRRPLSKIRFR 566
KG EA RVTGP G GS + K R+R
Sbjct: 83 KGNEAARVTGPEGAPVVGS-KYAADKRRYR 111
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 72.5 bits (170), Expect = 8e-12
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG-----FRSLG-DEEVEFECKESDK 479
+G+ KW++V + +GFI+ +DG +D+FVHQ+ + R+LG DEEV F+ E
Sbjct: 67 QGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKN 126
Query: 480 GLEATRVTGPNGTDCHGSDRRPLSKIRFRKIR 575
G EA VTGPNG + GS R RFRK R
Sbjct: 127 GPEAANVTGPNGDNVIGSRYRHKLLSRFRKNR 158
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 72.5 bits (170), Expect = 8e-12
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKGL 485
G KWFNV G+GFI +D +DVFVHQ+ ++ RS+GD E VEF+ E +KG
Sbjct: 61 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 120
Query: 486 EATRVTGPNGTDCHGS 533
EA VTGP G GS
Sbjct: 121 EAANVTGPGGVPVQGS 136
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 72.1 bits (169), Expect = 1e-11
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 10/78 (12%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFR-------SLGDEEVEFECKE 470
+RRG+ KWFN KG+G+ITPDDG DVFVHQS L+M GFR + + VEF+ +
Sbjct: 10 RRRGKVKWFNCTKGFGYITPDDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEH 69
Query: 471 ---SDKGLEATRVTGPNG 515
+D+ L+A VTG G
Sbjct: 70 ESPTDERLKAVCVTGIGG 87
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 71.7 bits (168), Expect = 1e-11
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESDKGL 485
G KWFNV G+GF+ DD +DVF+HQ+ + RS+GD E VEF+ E +KGL
Sbjct: 28 GVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGL 87
Query: 486 -EATRVTGPNGTDCHGS 533
EA VTGPNG GS
Sbjct: 88 PEAANVTGPNGEPVKGS 104
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 71.7 bits (168), Expect = 1e-11
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K +G KWFN +KG+GFITP+DG +DVFVH S +Q GF++L + + VEFE KG
Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPS 62
Query: 489 ATRV 500
A V
Sbjct: 63 AANV 66
>UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protein;
n=3; Oryza sativa|Rep: Cold shock domain protein 2-like
protein - Oryza sativa subsp. japonica (Rice)
Length = 221
Score = 71.3 bits (167), Expect = 2e-11
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEV-EFECKESDKG-LEA 491
+G K F+ G+ FITPDDG +D+F+HQS L+ G+RSL D++V E SD G +A
Sbjct: 7 KGMVKGFDATNGFSFITPDDGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSDDGRTKA 66
Query: 492 TRVTGPNGTDCHGSDRRP 545
VT P G+D H RP
Sbjct: 67 VDVTAP-GSDAHTGGSRP 83
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 71.3 bits (167), Expect = 2e-11
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-------EEVEFECKES 473
RR + WFN +G+G++ P DG +DVFVHQS LQM GFRS+ + +E+EFE +
Sbjct: 40 RREQVTWFNCVRGYGYVRPHDGSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFEL-DD 98
Query: 474 DKGLEATRVTGPNGTDCHGSDRRPLSKIR 560
D+ A VTGP G + ++ ++R
Sbjct: 99 DERRRAKNVTGPAGAPLKKTPKQFYRRVR 127
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K +G+ KWFN +KG+GFITP DG +DVFVH S +Q G ++L + + VEFE ++ KG
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKGPA 62
Query: 489 ATRVT 503
A VT
Sbjct: 63 AVNVT 67
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 70.9 bits (166), Expect = 2e-11
Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI +D QD+FVHQS + RS+GD E VEF+ +
Sbjct: 29 KVTGTVKWFNVKSGYGFINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGE 88
Query: 477 KGLEATRVTGPNGTDCHGS 533
KG EA VTGP G GS
Sbjct: 89 KGSEAANVTGPEGEPVKGS 107
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 70.1 bits (164), Expect = 4e-11
Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKE-SDKGLEAT 494
G+ WFN +KG+GFITPDDG ++FVHQS + G+RSL + VEF + SD +A
Sbjct: 13 GKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAV 72
Query: 495 RVTGPNGTDC--HGSDRRPLSKIRFRKIRCYNCG 590
VT P G + R ++ CYNCG
Sbjct: 73 NVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCG 106
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 70.1 bits (164), Expect = 4e-11
Identities = 40/89 (44%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL---QMPGFRSLGD-EEVEFECKESDK 479
K G KWFNV G+GFI +D +DVFVHQS + RS+GD E VEF+ +K
Sbjct: 62 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 480 GLEATRVTGPNGTDCHGSDRRPLSKIRFR 566
G EA VTGP+G GS + FR
Sbjct: 122 GNEAANVTGPSGEPVRGSQFAADKRRNFR 150
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 69.7 bits (163), Expect = 6e-11
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN AKG+GFIT D GG+DVF H + + M GFR+L + ++V+F+ KGL+A
Sbjct: 37 GTVKWFNDAKGFGFITQDGGGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPKGLQAQN 96
Query: 498 V 500
V
Sbjct: 97 V 97
>UniRef50_A3EXS4 Cluster: RNA-binding protein LIN-28-like protein;
n=1; Maconellicoccus hirsutus|Rep: RNA-binding protein
LIN-28-like protein - Maconellicoccus hirsutus (hibiscus
mealybug)
Length = 124
Score = 69.7 bits (163), Expect = 6e-11
Identities = 33/48 (68%), Positives = 37/48 (77%)
Frame = +3
Query: 447 EVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCG 590
EVEFEC+E+ KG EAT VTGPNG C GS +R + K R RKIRCYNCG
Sbjct: 1 EVEFECEETPKGYEATIVTGPNGNFCIGS-QRAMGKRRPRKIRCYNCG 47
Score = 44.8 bits (101), Expect = 0.002
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 589 GEFANHIAAKCXIGPQPKRCH 651
GE+ NH+AAKC +GP PKRCH
Sbjct: 47 GEYGNHVAAKCKLGPMPKRCH 67
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 69.7 bits (163), Expect = 6e-11
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE-EVEFECKESDKGLEAT 494
+G KWFN KG+GFITPDD DVFVH S +Q GF++L + V+FE + KG +AT
Sbjct: 3 QGTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQGAKGPQAT 62
Query: 495 RVT 503
VT
Sbjct: 63 GVT 65
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 68.5 bits (160), Expect = 1e-10
Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI D +DVFVHQS + RS+GD E+VEF+ +
Sbjct: 9 KVTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGE 68
Query: 477 KGLEATRVTGPNGTDCHGSDRRPLSKIRFR 566
KG EA VTGP G GS + FR
Sbjct: 69 KGNEAANVTGPQGEPVKGSQYAAEKRRGFR 98
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K G KWFN KG+GFITPDDG +DVFVH S +Q G++SL + ++V F + KG
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA 63
Query: 489 ATRVT 503
A VT
Sbjct: 64 AGNVT 68
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 67.7 bits (158), Expect = 2e-10
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG-LEAT 494
G KWF+ KG+GFI PDDGG+D+FVHQ+ ++ GFR+L + E VEF + G +A
Sbjct: 9 GTVKWFSGQKGFGFIAPDDGGEDLFVHQTSIRSDGFRTLSEGETVEFAVDHGEDGRTKAV 68
Query: 495 RVTGPNGTDCHG 530
VT G+ G
Sbjct: 69 EVTAVRGSYSSG 80
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 67.7 bits (158), Expect = 2e-10
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K G KWFN KG+GFITP DG +DVFVH S +Q FR+L + +EVEF ++ KG
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGPS 63
Query: 489 ATRV 500
A V
Sbjct: 64 AVNV 67
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 67.7 bits (158), Expect = 2e-10
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K G KWFN KG+GFITPDDG +DVFVH + +Q FR+L + ++VEF ++ +G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 489 ATRV 500
A V
Sbjct: 64 AANV 67
>UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;
cellular organisms|Rep: Cold shock domain family protein
- Geobacter sulfurreducens
Length = 66
Score = 67.3 bits (157), Expect = 3e-10
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
GR KWFN AKG+GFI D G+DVFVH S +Q GF+SL + E+V F+ KGL+A
Sbjct: 4 GRVKWFNDAKGFGFI-EQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPKGLQAAN 62
Query: 498 V 500
V
Sbjct: 63 V 63
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 67.3 bits (157), Expect = 3e-10
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI +D +DVFVHQ+ + RS+GD E VEF +
Sbjct: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
Query: 477 KGLEATRVTGPNGTDCHGS 533
KG EA VTGP G GS
Sbjct: 97 KGFEAAGVTGPGGEPVKGS 115
>UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein;
n=9; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Frankia sp. (strain CcI3)
Length = 67
Score = 66.9 bits (156), Expect = 4e-10
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEAT 494
+G KWFN KG+GFI+ D GG DVFVH S +QM G+++L + + VEF+ + KG +A
Sbjct: 3 QGTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQKGPQAD 62
Query: 495 RV 500
V
Sbjct: 63 AV 64
>UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12;
Gammaproteobacteria|Rep: Cold shock-like protein cspD -
Shigella flexneri
Length = 74
Score = 66.9 bits (156), Expect = 4e-10
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEAT 494
+G KWFN AKG+GFI P+ GG+D+F H S +QM G+R+L + V+F+ + KG A+
Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHAS 62
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 66.5 bits (155), Expect = 5e-10
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI +D +DVFVHQ+ + RS+GD E VEF +
Sbjct: 28 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGE 87
Query: 477 KGLEATRVTGPNGTDCHGS 533
KG EA VTGP G GS
Sbjct: 88 KGCEAAGVTGPGGEPVKGS 106
>UniRef50_A0YBV1 Cluster: CspA-like protein; n=17;
Proteobacteria|Rep: CspA-like protein - marine gamma
proteobacterium HTCC2143
Length = 91
Score = 66.1 bits (154), Expect = 7e-10
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATR 497
G KWFN AKG+GFI P+ GG DVF H S + M G+++L + V F+ KGL AT
Sbjct: 4 GTVKWFNNAKGFGFILPEGGGADVFAHYSTISMDGYKTLKAGQPVSFDTVNGPKGLHATN 63
Query: 498 VTGPNGTDCHGSDRRPLSKIR 560
+ + S+ R + IR
Sbjct: 64 IQAAQDS-ADNSNPRAVDDIR 83
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 65.7 bits (153), Expect = 9e-10
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+ +G KWFN +KG+GFI D G +D+FVH +Q G+RSL D E+VEF E DKGL+
Sbjct: 4 REQGIVKWFNDSKGFGFIQRDSG-EDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDKGLQ 62
Query: 489 ATRV 500
A V
Sbjct: 63 AEEV 66
>UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31;
Bacteria|Rep: Cold shock-like protein cspD - Haemophilus
influenzae
Length = 72
Score = 65.7 bits (153), Expect = 9e-10
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATR 497
G KWFN AKG+GFI+ + D+F H SV++M G+RSL ++V+FE SDKG AT+
Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDKGSHATK 63
Query: 498 V 500
+
Sbjct: 64 I 64
>UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10;
Bacteria|Rep: Cold shock-like protein cspA - Shewanella
violacea
Length = 70
Score = 65.3 bits (152), Expect = 1e-09
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GF+T D+GG DVFVH + GF++L + ++V FE ++ KGL+A+
Sbjct: 7 GTVKWFNEDKGFGFLTQDNGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQGPKGLQASN 66
Query: 498 V 500
V
Sbjct: 67 V 67
>UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator CspA;
n=21; Bacteria|Rep: Cold shock transcriptional regulator
CspA - Vibrio parahaemolyticus
Length = 70
Score = 64.9 bits (151), Expect = 2e-09
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K G KWFN KG+GFI+P++GG+D+FVH + GF++L + ++V + ++ KGL+
Sbjct: 4 KSTGSVKWFNETKGFGFISPENGGEDLFVHFQSIVSTGFKTLSEGQKVSYVVEQGKKGLQ 63
Query: 489 ATRVT 503
A VT
Sbjct: 64 AGEVT 68
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 64.5 bits (150), Expect = 2e-09
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN AKG+GFI D G+DVF H + + M GFR+L + ++VEFE KGL+A
Sbjct: 4 GTVKWFNDAKGFGFIA-QDNGEDVFCHHTAINMDGFRTLQEGQQVEFEVTRGPKGLQAQN 62
Query: 498 V 500
V
Sbjct: 63 V 63
>UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288;
Bacteria|Rep: Cold shock-like protein cspA - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 67
Score = 63.3 bits (147), Expect = 5e-09
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GFITP+ GG+D+F H S +Q GF+SL + + V F KG +AT+
Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKGPQATK 63
Query: 498 V 500
+
Sbjct: 64 I 64
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 62.9 bits (146), Expect = 6e-09
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEAT 494
+G KWFN KG+GFI+ D GG DVFVH S + G++SL + + V+FE + KG +A
Sbjct: 3 QGTVKWFNAEKGFGFISVDGGGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQKGPQAD 62
Query: 495 RV 500
V
Sbjct: 63 NV 64
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 62.9 bits (146), Expect = 6e-09
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Frame = +3
Query: 339 NVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKGLEATRVT 503
NV G+GFI +D +DVFVHQ+ ++ RS+GD E V+F+ E +KG EA VT
Sbjct: 1 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVT 60
Query: 504 GPNGTDCHGSDRRPLSKIRFRK 569
GP+G GS R + R+R+
Sbjct: 61 GPDGVPVEGS-RYAADRRRYRR 81
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 62.9 bits (146), Expect = 6e-09
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
++ G KWFN KG+GFITP GG D+FVH ++ GF+SL + + V F ++ KG++
Sbjct: 4 RQSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQKGMQ 63
Query: 489 A 491
A
Sbjct: 64 A 64
>UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula
bermudensis HTCC2503|Rep: Cold shock protein -
Parvularcula bermudensis HTCC2503
Length = 173
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECK--ESDKGLEA 491
RG KWF+ KG+GFIT + GG+DV +H S L+ G R+ E C+ ES+KGL+A
Sbjct: 15 RGFVKWFDQTKGYGFITDEAGGRDVLIHSSCLKQSG-RATAPEGAIVTCEAIESEKGLQA 73
Query: 492 TRVTGPNGTDCHGSDRRPLSKI 557
TR+ ++ + R P +++
Sbjct: 74 TRIINLEISELNTITRPPATRM 95
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATRVTG 506
KWF+ AKG+GF+T + +D+FVH V++ G L + + KGL A +
Sbjct: 110 KWFSRAKGYGFLTATNANEDIFVHMEVVRAAGLSELQPGQRLRASYGRGTKGLLAAAIEP 169
Query: 507 P 509
P
Sbjct: 170 P 170
>UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;
Bacteria|Rep: Cold-shock domain family protein -
Enterococcus faecalis (Streptococcus faecalis)
Length = 66
Score = 61.7 bits (143), Expect = 1e-08
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GFIT ++ G DVFVH S +Q GF++L + + V FE +E +G +AT
Sbjct: 4 GTVKWFNSDKGFGFITAEN-GNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQRGPQATN 62
Query: 498 VT 503
VT
Sbjct: 63 VT 64
>UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2;
Proteobacteria|Rep: Cold shock-like protein -
Haemophilus somnus (strain 129Pt) (Histophilus somni
(strain 129Pt))
Length = 69
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATR 497
G KWFN AKG+GF++ + DVF H SV++M G+RSL ++V+ E DKG AT+
Sbjct: 4 GIVKWFNNAKGFGFLSVESSDVDVFAHYSVIEMEGYRSLKAGQKVQCEVVHGDKGSHATK 63
Query: 498 V 500
+
Sbjct: 64 I 64
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEAT 494
+G KWFN KG+GFIT +DG DVFVH S + GF+SL + + V ++ E +G++A
Sbjct: 3 KGTVKWFNAEKGYGFITGEDGA-DVFVHFSAINGEGFKSLDEGQAVTYDLTEGARGMQAA 61
Query: 495 RVT 503
VT
Sbjct: 62 NVT 64
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 61.3 bits (142), Expect = 2e-08
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+ G KWFNV+KG+GF+T D+ G+DVFVH ++ G RSL + + V F ES KGL+
Sbjct: 85 REEGLVKWFNVSKGFGFVTRDN-GEDVFVHFRSIRGRGHRSLQEGQRVRFGVVESSKGLQ 143
Query: 489 ATRVT 503
A VT
Sbjct: 144 AEDVT 148
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEAT 494
+GR KWFN KG+GFI +D G DVFVH S +Q G++SL + ++VEF+ + +G +A
Sbjct: 2 QGRVKWFNAEKGFGFIERED-GDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAA 60
Query: 495 RV 500
V
Sbjct: 61 NV 62
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+ RG KWFNV KG+GFIT D+ G+DVFVH ++ G RSL + + V+F + KGL+
Sbjct: 105 RERGLVKWFNVKKGFGFITRDN-GEDVFVHFRSIRGTGHRSLSEGQNVKFSVVDGQKGLQ 163
Query: 489 ATRVT 503
A V+
Sbjct: 164 AEDVS 168
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 60.9 bits (141), Expect = 3e-08
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K G KWF+ KG+GFI+P DG +DVFVH S +Q +++L + + VEF ++ KG
Sbjct: 4 KMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPS 63
Query: 489 ATRV 500
A V
Sbjct: 64 AVNV 67
>UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12;
Gammaproteobacteria|Rep: Cold-shock protein CspD -
Pseudomonas aeruginosa
Length = 90
Score = 60.5 bits (140), Expect = 3e-08
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATR 497
G+ KWFN AKG+GFI + +D+F H S +QM G+++L + V FE + KGL A
Sbjct: 4 GKVKWFNNAKGYGFILAEGRDEDLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPKGLHAIN 63
Query: 498 VTGPNGTDCHGSDRRP 545
++ T S P
Sbjct: 64 ISPATATTAAPSAPAP 79
>UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Cold shock protein -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 100
Score = 60.5 bits (140), Expect = 3e-08
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
G KWFN KG+GFI P G +DVFVH S +Q G RSL + ++++FE ++ G A
Sbjct: 35 GTVKWFNPTKGYGFIAPSTGEKDVFVHISAVQRAGLRSLNEGQQLDFEIEQQQNGRAA 92
>UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein;
n=19; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Roseovarius sp. TM1035
Length = 68
Score = 60.5 bits (140), Expect = 3e-08
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
G KWFN KG+GFI PD+GG+DVFVH S ++ G L D ++V F+ + G E+
Sbjct: 4 GTVKWFNSTKGFGFIAPDNGGKDVFVHISAVERAGLTGLADNQKVTFDIESGRDGRES 61
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 60.1 bits (139), Expect = 5e-08
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
G KWFN KG+GF+ PDDGG+DVFVH S ++ G+ SL + +V +E + G +A
Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTNRSGKQA 113
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFE 461
V G KWFN KG+GFI PDDG QDVFVH S ++ G +L D +++ +E
Sbjct: 94 VMATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGLTALNDGQKLSYE 145
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 59.7 bits (138), Expect = 6e-08
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+ +G KWFNV+KG+GFIT + DVFVH ++ G RSL + ++V F +ESDKGL+
Sbjct: 82 REQGTVKWFNVSKGFGFITRGE-DDDVFVHFRNIRGRGHRSLAEGQKVRFYVRESDKGLQ 140
Query: 489 ATRVT 503
A V+
Sbjct: 141 AEDVS 145
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 59.7 bits (138), Expect = 6e-08
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KW++ AKG+GF++ DGG+DVFVH+S L G SL + ++V E KG EA
Sbjct: 178 GTVKWYDPAKGFGFVSVKDGGKDVFVHRSALARAGLDSLAEGQQVTMGVVEGQKGREAQS 237
Query: 498 VT 503
+T
Sbjct: 238 IT 239
Score = 43.6 bits (98), Expect = 0.004
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRS-LGDEEVEFECKESDKG 482
G +R KWFN KG+GF+ DG D F+H ++ G L + + + KG
Sbjct: 59 GPERDATVKWFNKEKGFGFVELGDGSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQGQKG 118
Query: 483 LEATRVT 503
+ T +T
Sbjct: 119 PQVTNIT 125
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 59.3 bits (137), Expect = 8e-08
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
++ G KWFN KG+GFITP+ G+D+FVH ++ GF+SL + ++V FE + KG +
Sbjct: 59 RQNGTVKWFNDEKGYGFITPET-GEDLFVHFRAVEGNGFKSLKEGQKVTFEAVQGQKGRQ 117
Query: 489 ATRV 500
A +V
Sbjct: 118 ADKV 121
>UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter
oxydans|Rep: Cold shock protein - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 96
Score = 58.8 bits (136), Expect = 1e-07
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
V G KWFN KG+GFI PD+GGQD FVH S L+ G +L + + V +E + G
Sbjct: 28 VMATGTVKWFNSTKGFGFIQPDNGGQDAFVHISELERAGMHTLNEGQHVSYELESGRNG 86
>UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6;
Gammaproteobacteria|Rep: Cold shock protein -
Pseudomonas fluorescens
Length = 69
Score = 58.4 bits (135), Expect = 1e-07
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
++ G KWFN KG+GFITP GG D+FVH Q GF+SL + ++V F KGL+
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQGGGDDLFVH-FPFQGTGFKSLQEGQKVSFVVVNGQKGLQ 62
Query: 489 ATRV 500
A V
Sbjct: 63 ADEV 66
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 58.4 bits (135), Expect = 1e-07
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFE 461
G KWFN KG+GFI PD+GG+DVFVH S ++ G R L + ++V +E
Sbjct: 4 GTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRDLAEGQKVTYE 51
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 58.0 bits (134), Expect = 2e-07
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+ G KWFN AKG+GFI +G DVFVH ++ G RSL + ++VEF + KGL+
Sbjct: 71 RETGTVKWFNDAKGYGFIQRGNGA-DVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQKGLQ 129
Query: 489 ATRVTG 506
A V G
Sbjct: 130 AEDVAG 135
>UniRef50_Q6YPQ4 Cluster: Cold shock protein; n=3; Firmicutes|Rep:
Cold shock protein - Onion yellows phytoplasma
Length = 74
Score = 57.6 bits (133), Expect = 2e-07
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMP--GFRSLGD-EEVEFECKESDKG 482
K++G C+WF+ KG+GFI D G+D+FVH S +Q G ++L + ++VEF KE D+G
Sbjct: 5 KQQGTCRWFSKDKGYGFIVSVD-GKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGDRG 63
Query: 483 LEATRVTGPN 512
+A V N
Sbjct: 64 AQAVDVVVVN 73
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 57.6 bits (133), Expect = 2e-07
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFE 461
G KWFN KG+GFI PDDGG DVFVH S ++ G +L + +++ +E
Sbjct: 18 GTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYE 65
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 57.6 bits (133), Expect = 2e-07
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEAT 494
+G KWFN KG+GFI ++ G DVFVH S +Q GF+SL + ++V F+ ++ +G +A
Sbjct: 3 QGTVKWFNAEKGFGFIEREN-GDDVFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQAA 61
Query: 495 RV 500
V
Sbjct: 62 NV 63
>UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9;
Chlorobiaceae|Rep: Cold shock-like protein CspG -
Chlorobium tepidum
Length = 97
Score = 57.2 bits (132), Expect = 3e-07
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVH-QSVLQMPGFRSLG-DEEVEFECKESDKGLEA 491
+ + KWF+ KG+GFI DGG+D+FVH S++ F+ L D +VE++ ++ KGL+A
Sbjct: 3 KSKVKWFDGKKGYGFILNPDGGEDIFVHFSSIISDQSFKVLNQDADVEYDLDKTQKGLQA 62
Query: 492 TRV 500
V
Sbjct: 63 KNV 65
>UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces ambofaciens ATCC 23877
Length = 172
Score = 57.2 bits (132), Expect = 3e-07
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKESDKGLEATR 497
G+ F+ +G+GFI PD+GG+DVF+H + L R LG +VEF+ +E D+GL+A+R
Sbjct: 9 GKIIRFDEFRGYGFIAPDNGGEDVFIHVNDLAFDK-RLLGPGMKVEFDVEEGDRGLKASR 67
Query: 498 VTGPNGT 518
V NG+
Sbjct: 68 VRIQNGS 74
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 57.2 bits (132), Expect = 3e-07
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL 437
G KWFN KG+GFI PDDG DVFVH S ++ G RSL
Sbjct: 4 GTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSL 42
>UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4;
Brucella|Rep: COLD SHOCK PROTEIN CSPA - Brucella
melitensis
Length = 101
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFE 461
G KWFN KG+GFI PD GG DVFVH S +Q G +L + ++V +E
Sbjct: 36 GTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYE 83
>UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putative;
n=1; Salinibacter ruber DSM 13855|Rep: 'Cold-shock'
DNA-binding domain, putative - Salinibacter ruber
(strain DSM 13855)
Length = 69
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/60 (41%), Positives = 39/60 (65%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
G KWF+ A+G+GF+ PD+G DVF+H S ++P + +EFE +E++KGL A +
Sbjct: 4 GTVKWFSPAEGYGFVEPDNGEDDVFLHHS--EVPDEDLEEGDRLEFEIEETEKGLNAVNI 61
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
+G KWFN KG+GFI PD+ G DVFVH + +Q G L + + V +E E G
Sbjct: 17 QGTVKWFNTQKGYGFINPDEDGNDVFVHITAVQNSGLTGLNEGQRVSYELAEQRNG 72
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 56.8 bits (131), Expect = 4e-07
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQS--VLQMPGF--RSLGD-EEVEFECKESDKGL 485
G+ KWFNV +G+GF+ +D +D+F+HQS V P +S+G+ EE+ F+ + KG
Sbjct: 31 GKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGN 90
Query: 486 EATRVTGPNGTDCHGSD 536
EA V+ +G GS+
Sbjct: 91 EAANVSAIDGKCVKGSE 107
>UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular
organisms|Rep: Cold shock protein - Bradyrhizobium
japonicum
Length = 67
Score = 56.4 bits (130), Expect = 6e-07
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFE 461
+G KWFN KG+GFI P GG+DVFVH S +Q G +L + + VE+E
Sbjct: 4 KGTVKWFNPTKGYGFIQPASGGKDVFVHISAVQKAGLSTLNEGQTVEYE 52
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 56.4 bits (130), Expect = 6e-07
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQM-PGFRSL-GDEEVEFECKESDKGLE 488
R KWF+ KG+GFI D G+DVFVH S +Q F++L D+ V FE + KGL
Sbjct: 2 RTSTVKWFDAKKGYGFIHHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVRFEMNDGPKGLH 61
Query: 489 ATRVTGPNGTDCHGSD 536
A V + + +D
Sbjct: 62 ALEVAPLDDEEAPSAD 77
>UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein;
n=11; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 68
Score = 56.4 bits (130), Expect = 6e-07
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
G KWFN KG+GFI P+ GG+DVFVH S ++ G L D ++V ++ + G E+
Sbjct: 4 GTVKWFNSTKGFGFIAPETGGKDVFVHISAVERSGLTGLADNQKVTYDLEAGRDGRES 61
>UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Parvibaculum lavamentivorans DS-1|Rep:
Putative cold-shock DNA-binding domain protein -
Parvibaculum lavamentivorans DS-1
Length = 199
Score = 56.0 bits (129), Expect = 7e-07
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWF+ KG+GFI P++GG DV VH S L+ G +L + V E KG +A R
Sbjct: 40 GVVKWFDAVKGYGFIIPENGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRRPKGAQAIR 99
Query: 498 VTGPNGT 518
V + T
Sbjct: 100 VVDVDDT 106
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRS-LGDEEVEFECKESDKGLEATRV 500
KWFN A+G+GF+T +G D+F+H L+ G R L +++ E KGL +
Sbjct: 139 KWFNRARGYGFVTRGEGTPDIFIHMETLRRYGIRDLLPGQQINVRFGEGPKGLMVAEI 196
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 55.6 bits (128), Expect = 1e-06
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL--QMP--GFRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI D+FV Q + +P RS+GD E VEF+ +
Sbjct: 68 KVTGTVKWFNVKSGYGFINRSVFHFDIFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIGE 127
Query: 477 KGLEATRVTGPNGTDCHGS 533
KG EA VTGP+G GS
Sbjct: 128 KGNEAANVTGPDGEAVKGS 146
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/65 (40%), Positives = 40/65 (61%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
GR F+ +G+GFI P+DGG+DVF+H + L +P VEFE + ++GL+A+ +
Sbjct: 24 GRVVRFDGTRGYGFIAPEDGGEDVFLHVNDLLIPEESVRSGLVVEFEVESGERGLKASGI 83
Query: 501 TGPNG 515
P G
Sbjct: 84 RLPEG 88
>UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium
loti|Rep: Cold-shock protein - Rhizobium loti
(Mesorhizobium loti)
Length = 97
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KW+ KG+GFI PD+G +DVFVH S L G +L + ++V C + KGLE
Sbjct: 33 GTVKWYKPEKGFGFIAPDNGEKDVFVHASTLTRSGLSALVEGQKVFVACGQGKKGLEVRS 92
Query: 498 V 500
+
Sbjct: 93 I 93
>UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38;
Alphaproteobacteria|Rep: Cold shock DNA binding protein
- Rhodopseudomonas palustris
Length = 235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGL 485
V+ G KWF+ +KG+GF+ PD+G DV +H +VL+ G+++ + + EC + KG
Sbjct: 67 VEISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQRAKGY 126
Query: 486 EATRVTG-PNGTDCHGSDRRP 545
+A R+ T H + P
Sbjct: 127 QAFRIVSMDESTAIHPAQMLP 147
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEAT 494
R + KWFN +G+GF+T +G D+FVH L+ G L + V KG+ A
Sbjct: 162 RAQVKWFNRLRGFGFLTCGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKGMMAA 221
Query: 495 RVTGPNG 515
+ NG
Sbjct: 222 EIQPENG 228
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 55.2 bits (127), Expect = 1e-06
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKES 473
G KWFNV KG+GFI PDDGG D FVH S ++ RS + C+ES
Sbjct: 4 GTVKWFNVQKGFGFIAPDDGGSDAFVHISAVE----RSSDRSPPGYRCRES 50
>UniRef50_Q8D046 Cluster: Cold shock protein; n=14;
Enterobacteriaceae|Rep: Cold shock protein - Yersinia
pestis
Length = 77
Score = 55.2 bits (127), Expect = 1e-06
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
+ GR KWFN ++G+GFI+P DGG DV+V+++ + +SL + ++VEF S G A
Sbjct: 12 KMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHGPSA 71
Query: 492 TRV 500
V
Sbjct: 72 ADV 74
>UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precursor;
n=2; Bacteroidetes/Chlorobi group|Rep: Cold-shock
protein, DNA-binding precursor - Pelodictyon
phaeoclathratiforme BU-1
Length = 91
Score = 55.2 bits (127), Expect = 1e-06
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GFI PD+GG DVFVH + L+ G +L + ++V+++ E + + A
Sbjct: 27 GTVKWFNKMKGFGFIIPDNGGADVFVHINELEKSGLATLNEADKVKYDMVEKNGKVAAGN 86
Query: 498 V 500
+
Sbjct: 87 I 87
>UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein;
n=1; Geobacter bemidjiensis Bem|Rep: Cold-shock
DNA-binding domain protein - Geobacter bemidjiensis Bem
Length = 92
Score = 55.2 bits (127), Expect = 1e-06
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGL 485
V G KWFN AKG+GFI D G DVFVH S +Q GF+SL + + V F+ + KG
Sbjct: 26 VMANGVVKWFNDAKGFGFI-EQDNGVDVFVHFSSIQGDGFKSLVEGDSVTFDVVQGAKGP 84
Query: 486 EATRV 500
+A V
Sbjct: 85 QAANV 89
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 55.2 bits (127), Expect = 1e-06
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGDEE-VEFECKESDKGL 485
G KWFN G+GFIT D G+D+FVH+S + P +S+GD E VEF GL
Sbjct: 36 GTVKWFNAKDGFGFITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEF-------GL 88
Query: 486 EATRVTGPNGTDCHGS 533
A++VTGP GS
Sbjct: 89 IASKVTGPGFKPVKGS 104
>UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12;
Bacteria|Rep: Cold shock-like protein cspA - Rickettsia
prowazekii
Length = 70
Score = 55.2 bits (127), Expect = 1e-06
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE 470
G+ KW+N K +GFI D+GG+DVFVH+S + G SL + +EV F+ +E
Sbjct: 7 GKVKWYNSTKNFGFIEQDNGGKDVFVHKSAIDAAGLHSLEEGQEVIFDIEE 57
>UniRef50_Q7VLQ6 Cluster: Cold shock-like protein CspD; n=6;
Proteobacteria|Rep: Cold shock-like protein CspD -
Haemophilus ducreyi
Length = 68
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKESDKGLEATR 497
G KWFN KG+GFIT D D+F H S ++ G+RSL ++V+FE +++G AT
Sbjct: 4 GIVKWFNNVKGFGFITCDTVEGDIFAHFSEIKQDGYRSLKVGQKVQFELVTNERGASATH 63
Query: 498 VT 503
++
Sbjct: 64 IS 65
>UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7;
Proteobacteria|Rep: Cold shock domain protein CspD -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 94
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPD-DGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEAT 494
G+ KWFN AKG+GFI D D+F H S +QM G+++L + V FE + KGL A
Sbjct: 6 GKVKWFNNAKGYGFIIKDGKPDDDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPKGLHAV 65
Query: 495 RV 500
+
Sbjct: 66 NI 67
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K G KWFN KG+GFI+ D G+DVFVH S +Q G R+L + + VEF + KG +
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTD-GKDVFVHFSAIQAQGRRTLREGQSVEFIVTDGQKGPQ 61
Query: 489 ATRV 500
A+ V
Sbjct: 62 ASEV 65
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 54.8 bits (126), Expect = 2e-06
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFIT---PDDGGQDVFVHQSVLQMPG-----FRSLGDEE-VEFECKE 470
+G KWF+V +GF+ P D +D FVHQ+ + R+L D+E V F+ E
Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149
Query: 471 SDKGLEATRVTGPNGTDCHGS 533
KG EA VTGP+G + GS
Sbjct: 150 GLKGPEAANVTGPDGENVRGS 170
>UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24;
Bacteria|Rep: Temperature acclimation protein B -
Xylella fastidiosa
Length = 85
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GFIT + G D+FVH +Q GF+SL + ++V F + KG++A +
Sbjct: 23 GTVKWFNDNKGFGFIT-SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQGQKGMQADQ 81
Query: 498 V 500
V
Sbjct: 82 V 82
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEV---EFECKESDKGL 485
++GR KWFN KG+GFI +G DVFVH + + GFR+L + ++ + E + KG
Sbjct: 2 QKGRVKWFNAEKGYGFI-EREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGP 60
Query: 486 EATRVT 503
+A VT
Sbjct: 61 QAVNVT 66
>UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:
Cold shock protein - Wolbachia sp. subsp. Brugia malayi
(strain TRS)
Length = 84
Score = 54.0 bits (124), Expect = 3e-06
Identities = 29/67 (43%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFR--SLGDEEVEFECKESDKGLEAT 494
G KWFN KG+GFI P+ G D+FVH S L+ G R SL E E K E
Sbjct: 4 GNIKWFNAEKGYGFIKPEANGNDIFVHISTLERSGIRPDSLRGENKEKGIKGERVSYELK 63
Query: 495 RVTGPNG 515
G NG
Sbjct: 64 EERGRNG 70
>UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1;
Chlorobium ferrooxidans DSM 13031|Rep: Cold-shock
protein, DNA-binding - Chlorobium ferrooxidans DSM 13031
Length = 70
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVH-QSVLQMPGFRSLG-DEEVEFECKESDKGLEAT 494
G+ KWF+V KG+GFI +GG+D+FVH +++ FR L D +V+FE + L+A
Sbjct: 4 GKVKWFDVRKGFGFILNPNGGEDIFVHFSNIVSEEKFRFLNQDADVDFELEARGNRLQAL 63
Query: 495 RVTGPNG 515
V G
Sbjct: 64 NVREKQG 70
>UniRef50_Q834D5 Cluster: Cold-shock domain family protein; n=1;
Enterococcus faecalis|Rep: Cold-shock domain family
protein - Enterococcus faecalis (Streptococcus faecalis)
Length = 68
Score = 52.8 bits (121), Expect = 7e-06
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
++G KWF+ KG+GFI ++ ++FVH + ++ GF+SL + + VEFE E ++GL+A
Sbjct: 2 QKGIVKWFDNRKGYGFIVYNE-EDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGNRGLQA 60
Query: 492 TRV 500
V
Sbjct: 61 AHV 63
>UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6;
Bacteria|Rep: Cold shock domain family protein -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 87
Score = 52.8 bits (121), Expect = 7e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
K RG+ KWFN KG+GFI + G+D FVH S +Q GF++L D V F+ + KG +
Sbjct: 18 KIRGKVKWFNKDKGFGFI--ESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGPQ 75
Query: 489 ATRV 500
A V
Sbjct: 76 AEEV 79
>UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7;
Flavobacteriales|Rep: Cold shock protein - Flavobacteria
bacterium BAL38
Length = 66
Score = 52.8 bits (121), Expect = 7e-06
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEAT 494
R G+ K+FN +KG+GFIT D+ G+D+FVH S +++ GD V +E +E KG A
Sbjct: 2 RTGKVKFFNESKGYGFITDDETGKDIFVHASGMRVESLNE-GD-AVSYEEEEGRKGKVAA 59
Query: 495 RV 500
+V
Sbjct: 60 QV 61
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 52.4 bits (120), Expect = 9e-06
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVL--QMPGFRSL-GDEEVEFECKESDKGLEA 491
G KWF+ KG+GF+T DD DVFVH S + GF++L + VEFE + KG A
Sbjct: 20 GTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQDSKGPRA 79
Query: 492 TRV 500
V
Sbjct: 80 KNV 82
>UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2;
Rickettsia bellii RML369-C|Rep: Cold shock-like protein
cspA - Rickettsia bellii (strain RML369-C)
Length = 70
Score = 52.4 bits (120), Expect = 9e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G+ KWFN K +GFI ++GG+DVFVH+S + G L + ++V F+ ++ + + A
Sbjct: 7 GKVKWFNPTKNFGFIEQENGGKDVFVHRSAVDAAGLAGLNEGQDVIFDLEDKNGKISAVN 66
Query: 498 V 500
+
Sbjct: 67 L 67
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
G + G K+FN KG+GFI DDG D FVH S +Q G L + + V F+ + D+G
Sbjct: 178 GERTSGTVKFFNTTKGFGFIARDDGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDDRG 237
Score = 50.4 bits (115), Expect = 4e-05
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL 437
+G K+FN +KG+GF+ DDGG+DVFVH S ++ G + L
Sbjct: 85 QGTVKFFNPSKGFGFVARDDGGEDVFVHISAVEQAGLQGL 124
>UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293|Rep: Cold
shock protein - Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 /NCDO 523)
Length = 74
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEA 491
+ G K + +G+G+ITPD+GG DVFVH + + M GF+SL E+V + + K +A
Sbjct: 2 KTGTVKIWQKERGYGYITPDEGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLVQGYKSYQA 61
Query: 492 TRV 500
+V
Sbjct: 62 AQV 64
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEA 491
G+ KWFN KG+GF++ DDGG DVFVH SVL G SL + VEF +G +A
Sbjct: 4 GKVKWFNSEKGFGFLSRDDGG-DVFVHSSVLP-AGVESLKPGQRVEFGVVAGQRGDQA 59
>UniRef50_Q82ZV8 Cluster: Cold-shock domain family protein; n=7;
cellular organisms|Rep: Cold-shock domain family protein
- Enterococcus faecalis (Streptococcus faecalis)
Length = 67
Score = 51.2 bits (117), Expect = 2e-05
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
+ G K FN +G+GFI +DG + +FVHQ+ + MPGFR L + + VE+E E + +A
Sbjct: 2 KTGTVKSFNHKRGYGFIIAEDGSE-IFVHQTGICMPGFRKLLEGQAVEYETAEYEGRTKA 60
Query: 492 TRVT 503
VT
Sbjct: 61 VNVT 64
>UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein;
n=11; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Mesorhizobium sp. (strain BNC1)
Length = 69
Score = 51.2 bits (117), Expect = 2e-05
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL 437
G K+FN KG+GFI PDDG DVFVH S ++ G R++
Sbjct: 4 GTVKFFNATKGFGFIQPDDGAADVFVHISAVERAGMRTI 42
>UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep:
Ysb - Agrobacterium tumefaciens
Length = 100
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL 437
G+ KWF+ K +GFITPDDGG DVF+H S + P +L
Sbjct: 4 GKVKWFDATKRFGFITPDDGGPDVFLHLSSITDPACPTL 42
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEAT 494
+G KWF+ KG+GFIT +D G D F H S +QM G+R L G + V FE G
Sbjct: 6 QGTVKWFSAQKGYGFITGED-GIDYFAHFSEIQMDGYRKLSGGQPVLFEAGTDANGRSLA 64
Query: 495 RVTGP 509
+ P
Sbjct: 65 KNISP 69
>UniRef50_Q8G880 Cluster: Cold shock protein; n=3;
Bifidobacterium|Rep: Cold shock protein -
Bifidobacterium longum
Length = 79
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKG 482
+G K+F KG+GFI PDDGG+DVFVH + ++ G F+ L + + VE+ S KG
Sbjct: 3 QGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKG 62
Query: 483 LEATRV 500
+A V
Sbjct: 63 TQAKDV 68
>UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein;
n=19; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Silicibacter sp. (strain TM1040)
Length = 179
Score = 50.4 bits (115), Expect = 4e-05
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEAT 494
RG KWF+ AKG+GFI D G D+ +H +VL+ G S+ D +E +D+G++A
Sbjct: 12 RGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGIEVVTHRTDRGVQAV 71
Query: 495 RV 500
+
Sbjct: 72 EI 73
Score = 37.5 bits (83), Expect = 0.28
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 324 RCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE 449
R KWF+ AKG+GF +DVF+H VL+ G + E
Sbjct: 107 RVKWFDKAKGFGFANVFGRDEDVFLHVEVLRQSGLSDVQSGE 148
>UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomonas
sp. MED121|Rep: Cold-shock protein CspD - Marinomonas
sp. MED121
Length = 92
Score = 50.4 bits (115), Expect = 4e-05
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATR 497
G KWFN AKG+GFI + +D+F+H S + + G+++L + V F+ +GL A
Sbjct: 4 GTVKWFNNAKGYGFIVSESFEEDLFIHYSSILIDGYKTLKAGQSVSFKTSPGKQGLHAVD 63
Query: 498 V 500
+
Sbjct: 64 I 64
>UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein;
n=3; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Rubrobacter xylanophilus (strain DSM 9941 / NBRC
16129)
Length = 197
Score = 50.0 bits (114), Expect = 5e-05
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+ +GR KWF+ KG+GF+ GG+D+FVH S ++ SLG EVE+E +++G
Sbjct: 133 REQGRVKWFDPEKGYGFLV-RPGGEDLFVHHSEVEGDA-SSLGQGVEVEYEVGRNERGPN 190
Query: 489 ATRV 500
A RV
Sbjct: 191 ARRV 194
>UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:
Cold shock protein - Rhodococcus sp. (strain RHA1)
Length = 119
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
R G +WFN +G+GF+ P DG D+FVH S + G R L + + V F ++ G +A
Sbjct: 54 RTGTVRWFNAEQGFGFLAPADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTETGDQA 113
Query: 492 TRV 500
V
Sbjct: 114 RDV 116
>UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1; Nocardia
farcinica|Rep: Putative cold shock protein - Nocardia
farcinica
Length = 122
Score = 49.6 bits (113), Expect = 6e-05
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKG 482
G R G WF+ KG+GFITPDD VFV ++ G+R+L V + +E+ G
Sbjct: 49 GPWRHGTVAWFDAEKGFGFITPDDRSPAVFVEFHAIEAVGYRTLVAGGPVVYRAEETKAG 108
Query: 483 LEATRV 500
EA V
Sbjct: 109 PEAVAV 114
>UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2;
Salinibacter ruber DSM 13855|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 75
Score = 49.6 bits (113), Expect = 6e-05
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVH-QSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
+G+ K+F+ ++G+GFI P DG +DVF+H ++ M L + + +E+E ++++KGL A
Sbjct: 3 KGKLKFFDTSRGFGFIEPLDGSEDVFLHANNISGMTSGEDLREGQTIEYETEQTEKGLSA 62
>UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Sphingomonas wittichii RW1|Rep: Putative
cold-shock DNA-binding domain protein - Sphingomonas
wittichii RW1
Length = 198
Score = 49.6 bits (113), Expect = 6e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWF+ +G+GFI D DV VH SVL+ G R+L + + E D+GL+A R
Sbjct: 36 GAVKWFDATRGFGFIATDGDRGDVLVHFSVLRDHGRRTLPEGARIACEVVARDRGLQARR 95
Query: 498 VTGPNGTDCHGSDRRPLSK 554
+ + + G D ++K
Sbjct: 96 ILAIDLSTATGPDPDLIAK 114
Score = 40.3 bits (90), Expect = 0.039
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE-EVEFECKESDKG 482
KWFN KG+GF+ D QD+F+H ++ G L E ++ E KG
Sbjct: 138 KWFNRLKGYGFLVRDGETQDIFIHMETVRRAGLPDLLPETRMKARIAEGRKG 189
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 49.2 bits (112), Expect = 8e-05
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFR 431
G W+N KG GFI PD GG DVFVH S L+ G +
Sbjct: 4 GTVIWYNPVKGLGFINPDQGGDDVFVHMSALKASGLK 40
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 49.2 bits (112), Expect = 8e-05
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GFI +GG DVFVH + G R+L + ++V FE + KG +A
Sbjct: 35 GIVKWFNDEKGFGFI-EREGGPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKGPQAEN 93
Query: 498 VT 503
V+
Sbjct: 94 VS 95
>UniRef50_Q3W076 Cluster: Cold-shock DNA-binding domain; n=2;
Frankia|Rep: Cold-shock DNA-binding domain - Frankia sp.
EAN1pec
Length = 146
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/58 (37%), Positives = 37/58 (63%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEAT 494
G+ F+ +G+GF+ P DGG+DVF+H + L + + +EFE +ESD+G +A+
Sbjct: 4 GKVLRFDHVRGYGFLAPSDGGEDVFLHANDLLVEKSLVVPGVVMEFEVEESDRGRKAS 61
>UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Maricaulis maris MCS10|Rep: Cold-shock DNA-binding
domain protein - Maricaulis maris (strain MCS10)
Length = 174
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATRV 500
KWF+ +G+GF+T D+ DVF+H + L+ GF + + +E C E KG A +
Sbjct: 111 KWFDALRGYGFVTCDNVEGDVFLHAATLRRAGFEDIQPGDRIEVRCVEGPKGALAAEI 168
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG-FRSLGDEEVEFECKESDKGLEATR 497
GR KW++ A+G+GFI DG D+ +H S L+ G +L + ++ + + DKG +A
Sbjct: 18 GRVKWYDPARGYGFIDASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQGDKGRQAVE 77
Query: 498 VTGPNGTDCHGSDRRP 545
+ G D + ++ RP
Sbjct: 78 LVEMTGGD-NEAEARP 92
>UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1;
Congregibacter litoralis KT71|Rep: Cold-shock domain
family protein - Congregibacter litoralis KT71
Length = 189
Score = 48.8 bits (111), Expect = 1e-04
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 240 KAEMQFPLPVSRXXXXXXXXXXGVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQM 419
KAE P + G G KWFN KG+GFI ++ G ++FVH +
Sbjct: 99 KAEKSAGKPTNTAAEQSPAAPAGDAEEGTVKWFNGTKGFGFIIREN-GDEIFVHHRSIIG 157
Query: 420 PGFRSLGD-EEVEFECKESDKGLEATRV 500
G RSL D V + +DKG +A V
Sbjct: 158 EGRRSLRDGAPVRYRVVTTDKGPQAEEV 185
>UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 210
Score = 48.4 bits (110), Expect = 1e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATRV 500
KWFN KG+GF+ DG D F+H SVLQ G+ L + + + KG++ + +
Sbjct: 10 KWFNATKGFGFVRVSDGEPDAFLHISVLQRAGYSELPEGATIVCDLAPGQKGMQVSEI 67
Score = 40.3 bits (90), Expect = 0.039
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
G K+F+ KG+GF+ PD GG+DV+V LQ G L + V + KG
Sbjct: 147 GVVKFFSADKGFGFVVPDGGGKDVYVGSRTLQDCGVSVLEQGQRVRMSIRMGKKG 201
>UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein;
n=6; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 181
Score = 48.4 bits (110), Expect = 1e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWF+ KG+GF+ D+GG D+ +H +VL+ G S+ + V + + +GL+A
Sbjct: 24 GVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRGSIAEGARVMLRTQATGRGLQAVE 83
Query: 498 V 500
+
Sbjct: 84 I 84
Score = 43.6 bits (98), Expect = 0.004
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 324 RCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATRV 500
R KWF+ AKG+GF +DVFVH VL+ GF L E V + + +G A V
Sbjct: 116 RVKWFDKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVAMKVVDGPRGRMAAEV 175
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 48.4 bits (110), Expect = 1e-04
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFNV+KG+GF+T G+++FVH + G + L + +++EF + DKG +A
Sbjct: 79 GTVKWFNVSKGYGFVT-RASGEEIFVHFRSISGNGRKVLREGQKIEFSVVDGDKGPQAED 137
Query: 498 V 500
V
Sbjct: 138 V 138
>UniRef50_Q1VQ89 Cluster: Cold shock protein; n=8;
Bacteroidetes|Rep: Cold shock protein - Psychroflexus
torquis ATCC 700755
Length = 63
Score = 48.0 bits (109), Expect = 2e-04
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATR 497
+G K+FN KG+GFIT + +D FVH S L + R GD EVEF+ +E +KGL A
Sbjct: 3 KGTVKFFNDTKGFGFITEEGVDKDHFVHASGL-IDEIRE-GD-EVEFDLQEGNKGLNAVN 59
Query: 498 V 500
V
Sbjct: 60 V 60
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLE 488
+++G KWFN +KG+GFI ++ G D+FVH +Q GF++L + + V F KG +
Sbjct: 4 QQQGTVKWFNESKGFGFIQREN-GSDLFVHFRSIQGQGFKTLKEGQRVSFTEVAGQKGPQ 62
Query: 489 ATRV 500
A V
Sbjct: 63 AENV 66
>UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma
proteobacterium HTCC2207|Rep: Cold shock protein - gamma
proteobacterium HTCC2207
Length = 89
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKESDKGLEATR 497
GR KWF+ +G+GFI PD+G +++F H + M G+++L + V ++ + G A
Sbjct: 5 GRVKWFSNDRGFGFIEPDNGERELFAHHQNIIMEGYKTLKCFQRVTYDVEHGKNGRHAVN 64
Query: 498 V 500
+
Sbjct: 65 I 65
>UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1;
Caulobacter sp. K31|Rep: Cold-shock protein, DNA-binding
- Caulobacter sp. K31
Length = 201
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKG 482
G R + KWFN KG+GF+ D D+FVH L+ G L ++V E KG
Sbjct: 131 GPAERAKVKWFNRTKGYGFVVRDGQPGDIFVHIETLRRGGLEDLQPGDDVMVRFAEGPKG 190
Query: 483 LEATRVT 503
L +T
Sbjct: 191 LVVAEIT 197
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQ----DVFVHQSVLQMPG 425
V+ GR KWF+ KG+GFI PDD GQ DV +H + L+ G
Sbjct: 16 VRISGRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCG 58
>UniRef50_A6CF18 Cluster: Probable cold shock protein scoF; n=1;
Planctomyces maris DSM 8797|Rep: Probable cold shock
protein scoF - Planctomyces maris DSM 8797
Length = 65
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +3
Query: 348 KGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATRVT 503
KG+GFI +DG QD+F H S L F L + + VEFE ++SD+GL A RVT
Sbjct: 12 KGFGFI--NDGQQDIFFHLSSLDGVTFDQLVEGQTVEFETEKSDRGLRAVRVT 62
>UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rubrobacter xylanophilus DSM 9941|Rep: Cold-shock
DNA-binding domain protein - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 69
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
RGR KWF+ KG+GFI + G++V VH + ++ GFR+L + EVE+ +++ G
Sbjct: 3 RGRVKWFSGEKGFGFI-ETESGEEVLVHYTEIKGEGFRALEEGAEVEYAAVKTEDG 57
>UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1;
Saccharopolyspora erythraea NRRL 2338|Rep: Putative
DNA-binding protein - Saccharopolyspora erythraea
(strain NRRL 23338)
Length = 150
Score = 47.2 bits (107), Expect = 3e-04
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 336 FNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATRV 500
F+ KG+GFI PD GG+DVF+H S+L L G VEFE ++G +A V
Sbjct: 9 FDGIKGYGFIAPDAGGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQGTKAMTV 64
>UniRef50_A2TNS0 Cluster: Cold shock protein; n=4;
Bacteroidetes|Rep: Cold shock protein - Dokdonia
donghaensis MED134
Length = 82
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/64 (35%), Positives = 40/64 (62%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLE 488
+++ G+ K+FN KG+GFI D+ ++VFVH + + G R +++V FE ++ +KG
Sbjct: 17 IRKEGKVKFFNTKKGFGFIAIDNSDEEVFVHTT--NVTG-RLRENDKVTFEVEDGEKGPS 73
Query: 489 ATRV 500
A V
Sbjct: 74 AVNV 77
>UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 74
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
G +FN G+GFI +D +DVF H + P +EVEF+ +++DKG AT +
Sbjct: 14 GEVDFFNDTGGYGFIETEDADEDVFFHMEDVGGPDLEE--GQEVEFDIEQADKGPRATNL 71
Query: 501 T 503
T
Sbjct: 72 T 72
>UniRef50_Q56922 Cluster: Major cold shock protein; n=31;
Enterobacteriaceae|Rep: Major cold shock protein -
Yersinia enterocolitica
Length = 46
Score = 47.2 bits (107), Expect = 3e-04
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 KGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDK 479
KG+GFITP DG +DVFVH S +Q F++L + ++VEF + K
Sbjct: 2 KGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAK 46
>UniRef50_Q9Y534 Cluster: Cold shock domain-containing protein C2;
n=33; Euteleostomi|Rep: Cold shock domain-containing
protein C2 - Homo sapiens (Human)
Length = 153
Score = 47.2 bits (107), Expect = 3e-04
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 246 EMQFPLPV--SRXXXXXXXXXXGVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQM 419
++ PLP +R G +G CK F+ ++G GFITP++G +D+FVH S ++
Sbjct: 44 DLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEG 103
Query: 420 PGFRSLGDE 446
GDE
Sbjct: 104 EYVPVEGDE 112
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 46.8 bits (106), Expect = 5e-04
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GFI D G DVF H + GF++L + + V F + KG A
Sbjct: 7 GTVKWFNEVKGFGFI-QQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVN 65
Query: 498 V 500
+
Sbjct: 66 I 66
>UniRef50_Q2RWM8 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 68
Score = 46.8 bits (106), Expect = 5e-04
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD 443
G WF+ G+GFI PDDGG D+ V L G RSL D
Sbjct: 4 GTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRD 44
>UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein;
n=3; Magnetospirillum|Rep: Cold shock DNA-binding domain
protein - Magnetospirillum gryphiswaldense
Length = 209
Score = 46.8 bits (106), Expect = 5e-04
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD 443
KWFN +KG+GF+ P DG D F+H S L+ G + +
Sbjct: 57 KWFNASKGFGFVAPSDGTPDAFLHISALERAGLTQVAE 94
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATR 497
G K+F+ KG+GF+ D GG+DVFVH L+ G ++L + V + KG +A
Sbjct: 146 GVVKFFSAEKGFGFVQTDQGGKDVFVHIKALERSGIKALETGQRVRCTTTQGQKGPQADT 205
Query: 498 V 500
V
Sbjct: 206 V 206
>UniRef50_A0PKE1 Cluster: DNA-binding protein; n=1; Mycobacterium
ulcerans Agy99|Rep: DNA-binding protein - Mycobacterium
ulcerans (strain Agy99)
Length = 135
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
GR F+ +G+GFI PD GG+DVF+H + L + V F+ ++ +G AT V
Sbjct: 5 GRIVRFDDVRGYGFIAPDSGGEDVFLHANDLDFDRLLAKRGTRVSFDIEDGPRGKFATAV 64
>UniRef50_Q48493 Cluster: Major cold shock protein; n=50;
Bacteria|Rep: Major cold shock protein - Klebsiella
pneumoniae
Length = 46
Score = 46.8 bits (106), Expect = 5e-04
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 345 AKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDK 479
+KG+GFI+P DG +DVFVH S +Q F++L + +EV F + K
Sbjct: 1 SKGFGFISPKDGSKDVFVHFSAIQSDSFKTLNEGQEVSFTIENGAK 46
>UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas
mobilis|Rep: Cold shock protein - Zymomonas mobilis
Length = 174
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFEC-KESDKGLEA 491
KWFN KG+GF+ + QD+FVH G + + + C ++SDKGL A
Sbjct: 110 KWFNRTKGYGFLIRNADQQDIFVHAEAFHAAGIKKFEAGKSLYACLRQSDKGLSA 164
Score = 41.1 bits (92), Expect = 0.022
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE-VEFECKESDKGLEATR 497
G KWF++ KG+GF+ G D+ +H S+LQ G R L + V+ + S +G +A +
Sbjct: 15 GYVKWFDIIKGFGFLIGSKGEGDILIHFSLLQEYGKRFLPEGSWVKCLARRSRQGWKAHK 74
Query: 498 V 500
+
Sbjct: 75 I 75
>UniRef50_A0Z255 Cluster: Cold shock protein, CspA family-like
protein; n=1; marine gamma proteobacterium HTCC2080|Rep:
Cold shock protein, CspA family-like protein - marine
gamma proteobacterium HTCC2080
Length = 138
Score = 46.4 bits (105), Expect = 6e-04
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATR 497
G KWFN KG+GFI DDG +VFVH ++ RS+ + V + + SD+G +A
Sbjct: 76 GNIKWFNATKGFGFIVGDDGA-EVFVHYRNVEGLTKRSIKQGQRVAYSVRASDRGPQAEG 134
Query: 498 V 500
V
Sbjct: 135 V 135
>UniRef50_Q9Y2V2 Cluster: Calcium-regulated heat stable protein 1;
n=14; Euteleostomi|Rep: Calcium-regulated heat stable
protein 1 - Homo sapiens (Human)
Length = 147
Score = 46.4 bits (105), Expect = 6e-04
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3
Query: 258 PLPV--SRXXXXXXXXXXGVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFR 431
PLP +R G +G CK F +KG GFITP DGG D+F+H S ++
Sbjct: 42 PLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVP 101
Query: 432 SLGDEEVEFECKESDKG--LEATRV 500
GDE C K L+A V
Sbjct: 102 VEGDEVTYKMCSIPPKNEKLQAVEV 126
>UniRef50_A2U2L8 Cluster: Cold shock protein; n=3;
Bacteroidetes|Rep: Cold shock protein - Polaribacter
dokdonensis MED152
Length = 76
Score = 46.0 bits (104), Expect = 8e-04
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLE 488
+ +G K+FN +KG+GFIT + ++ FVH S L + R ++EVEF+ ++ KGL
Sbjct: 13 IMNKGTVKFFNESKGFGFITEEGTNKEHFVHVSGL-VDEIRE--NDEVEFDLQDGRKGLN 69
Query: 489 ATRV 500
A V
Sbjct: 70 AVNV 73
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 45.6 bits (103), Expect = 0.001
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG----FRSLGD-EEVEFECKESDKGL 485
G K V G G I +D +DVFVHQ+ ++ RS+GD E VEF+ E +K +
Sbjct: 33 GTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDV 92
Query: 486 EATRVTGPNGTDCHGS 533
EA VTG G S
Sbjct: 93 EAASVTGLGGVPVQDS 108
>UniRef50_Q9ZHW6 Cluster: Major cold shock protein; n=8;
Bacteria|Rep: Major cold shock protein - Enterococcus
faecalis (Streptococcus faecalis)
Length = 50
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +3
Query: 348 KGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
KG+GFI+P+DG DVFVH S +Q GF++L + + V F+ ++ +G +A
Sbjct: 1 KGFGFISPEDGN-DVFVHFSAIQGDGFKTLEEGQAVTFDVEDGHRGPQA 48
>UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1;
Desulfotalea psychrophila|Rep: Hypothetical cold-shock
protein - Desulfotalea psychrophila
Length = 204
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG 482
G K +N KG+GFITPD+GG DVF+H + R + + + DKG
Sbjct: 4 GTIKHWNDEKGYGFITPDNGGNDVFLHIKAFKKRPHRPEIGQVISYGTTSGDKG 57
>UniRef50_UPI000050F90E Cluster: COG1278: Cold shock proteins; n=1;
Brevibacterium linens BL2|Rep: COG1278: Cold shock
proteins - Brevibacterium linens BL2
Length = 126
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG---LEA 491
GR KWF+V KG+GF+ +DG Q F+H SVL + G ++++ +S +G L+A
Sbjct: 4 GRVKWFDVDKGFGFVIAEDGSQ-AFLHSSVLPEDAEVTKG-TRLDYDVVDSRRGAQVLKA 61
Query: 492 TRVTGP 509
++GP
Sbjct: 62 RLLSGP 67
>UniRef50_Q5P4M3 Cluster: Probable cold shock family protein; n=1;
Azoarcus sp. EbN1|Rep: Probable cold shock family
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 189
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECK-ESDKGLEATRVTG 506
KW N +G+GFI P DGG +VFVH S G R E + FE + + D+ A V+
Sbjct: 9 KW-NDDRGFGFIVPKDGGPEVFVHVSAFPRDGRRPQIGEPLSFEIELDKDRKKRAVGVSR 67
Query: 507 PNGTDCHGSDRRPLSKIRFRK 569
P R L + R ++
Sbjct: 68 PGRPKLAPVRRHALDRKRAKR 88
>UniRef50_Q1ZUW9 Cluster: Predicted membrane protein; n=3;
Vibrionaceae|Rep: Predicted membrane protein - Vibrio
angustum S14
Length = 204
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG-LEA 491
++G+ +N KG+GFI PD+G QDVF H S L R +E + F + KG + A
Sbjct: 3 QQGKIISWNQQKGFGFIAPDNGEQDVFFHVSALPDKQCRPRINEAITFCIGKDKKGRMSA 62
Query: 492 TRVT 503
T VT
Sbjct: 63 TTVT 66
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLE 488
K +G KWFN +KG GFI D+ DVFVH + G ++L + V F E+D G +
Sbjct: 4 KLKGTVKWFNDSKGVGFIQRDNEA-DVFVHYKSIVSEGHKTLKKGQAVSFFITENDFGRQ 62
Query: 489 ATRV 500
A+ V
Sbjct: 63 ASEV 66
>UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroides
fragilis|Rep: Cold shock-like protein - Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343)
Length = 69
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
GR ++FN AKG+GF+ D G+ F H + P + GD V FE + +G+ A R+
Sbjct: 8 GRIEYFNAAKGYGFVKDADNGEKYFFH--ISSAPATIAEGD-RVTFEIERGMRGMNAVRI 64
Query: 501 T 503
+
Sbjct: 65 S 65
>UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10;
Streptococcaceae|Rep: Cold shock protein C - Lactococcus
lactis
Length = 66
Score = 44.4 bits (100), Expect = 0.002
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEAT 494
+G+ WFN KG+GFI DD QDVF + +Q F+ + ++V F+ K + +G A+
Sbjct: 3 KGKINWFNADKGYGFIMADD-MQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSRGRYAS 61
Query: 495 RV 500
V
Sbjct: 62 NV 63
>UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Nitrobacter hamburgensis X14|Rep: Cold-shock
DNA-binding domain protein - Nitrobacter hamburgensis
(strain X14 / DSM 10229)
Length = 68
Score = 44.4 bits (100), Expect = 0.002
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFEC-KESDKGLEATR 497
G K+FN KG+GFI PDDG D+F+H L + VE+E K D L A R
Sbjct: 4 GSVKFFNAEKGYGFIQPDDGTPDIFLHVHGLADKLRYPCPRDRVEYEVGKGPDGRLRAER 63
Query: 498 V 500
V
Sbjct: 64 V 64
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGF-RSLGD-EEVEFECKESDKGLEAT 494
G KW++ +G+GF++ +D G+DVF+H S ++ GF + + + E + F+ E +KG A
Sbjct: 6 GTVKWYDSERGYGFVSTND-GRDVFLHHSQIKEKGFDKEVHEGESIGFDIIEQEKGPAAI 64
Query: 495 RV 500
V
Sbjct: 65 NV 66
>UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein;
n=1; Sphingopyxis alaskensis|Rep: Cold-shock DNA-binding
domain protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 90
Score = 44.0 bits (99), Expect = 0.003
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE-VEFECKESDKG 482
G K+FN KG+GFI +DG D FVH + +Q G +L E+ V +E + G
Sbjct: 26 GTVKFFNNDKGYGFIENEDGSGDSFVHITAVQAAGMDTLNKEQRVSYELETGKNG 80
>UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia
solanacearum UW551|Rep: Cold shock protein - Ralstonia
solanacearum UW551
Length = 82
Score = 44.0 bits (99), Expect = 0.003
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVF 395
G KWFN KG+GFITPD GG D+F
Sbjct: 46 GTVKWFNETKGFGFITPDGGGADLF 70
>UniRef50_Q4Q8I6 Cluster: RNA binding protein rbp16, putative; n=5;
Trypanosomatidae|Rep: RNA binding protein rbp16,
putative - Leishmania major
Length = 142
Score = 44.0 bits (99), Expect = 0.003
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 333 WFNVAKGWGFITPDDGGQDVFVHQSVLQMP--GFRSLG-DEEVEFECKESDKGLEATRVT 503
W + +G+GFI + + FVH S LQ G+R+L D+EVEFE D A VT
Sbjct: 25 WMS-GRGFGFIEDNADKKQHFVHFSALQTETGGYRALAVDQEVEFEVASQDGRTRAENVT 83
Query: 504 GPNGTDCHGSDRRP 545
P G R P
Sbjct: 84 APGGGKLPSGPRPP 97
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 43.6 bits (98), Expect = 0.004
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 429 RSLGD-EEVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRK 569
RS+GD E VEF+ E +KG EA VTGP G GS P ++ RFR+
Sbjct: 82 RSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAP-NRRRFRR 128
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 43.6 bits (98), Expect = 0.004
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQ 404
K +G KWFNV G+GFI +D +DVFVHQ
Sbjct: 35 KVQGTVKWFNVRNGYGFINRNDTKEDVFVHQ 65
>UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein;
n=8; Bacteroidetes|Rep: Cold-shock DNA-binding domain
protein - Croceibacter atlanticus HTCC2559
Length = 64
Score = 43.6 bits (98), Expect = 0.004
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
G K+FN KG+GFI + ++ FVH + L + R D+ VEFE K+ +KG+ A V
Sbjct: 4 GTVKFFNDTKGFGFIKEEGTNEEHFVHVTGL-IDEIRE--DDRVEFELKQGNKGMNAVNV 60
>UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2;
Flexibacteraceae|Rep: Conserved domain protein -
Microscilla marina ATCC 23134
Length = 64
Score = 43.6 bits (98), Expect = 0.004
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATR 497
+G K+F KG+GFIT D G+D+F H S Q F ++ V +E KG++AT
Sbjct: 3 KGVVKFFKEDKGYGFITNSDTGEDIFFHVSDTQDQLFE---NDNVTYEETRGKKGMQATD 59
Query: 498 V 500
V
Sbjct: 60 V 60
>UniRef50_Q9RBP7 Cluster: Cold shock protein 7.4; n=2;
Rhodococcus|Rep: Cold shock protein 7.4 - Rhodococcus
sp. 7/1
Length = 57
Score = 43.2 bits (97), Expect = 0.006
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL 437
+W+N KG+G +TPDDG +D FVH + L+ + S+
Sbjct: 3 RWYNAEKGFGCLTPDDGSKDCFVHFTALRSERWLSI 38
>UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein;
n=1; Shewanella putrefaciens 200|Rep: Cold-shock
DNA-binding domain protein - Shewanella putrefaciens 200
Length = 149
Score = 43.2 bits (97), Expect = 0.006
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATR 497
+G KWF+V +G+GFIT G D + H S + +GD +V FE + KGL R
Sbjct: 4 QGVVKWFSVPQGFGFITSITEGTDHYFHVSDVIGSALPEIGD-KVTFETISTPKGLRGKR 62
Query: 498 V 500
V
Sbjct: 63 V 63
>UniRef50_Q51929 Cluster: Major cold shock protein; n=74;
Bacteria|Rep: Major cold shock protein - Photobacterium
mondopomensis
Length = 46
Score = 42.7 bits (96), Expect = 0.007
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 KGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDK 479
KG+GF+T ++GG DVFVH + GF++L + ++V F+ ++ K
Sbjct: 2 KGFGFLTQNNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQK 46
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +3
Query: 354 WGFITPDDGGQDVFVHQSVLQMPGFR----SLGDEE-VEFECKESDKGLEATRVTGPNG 515
+G++ + G DVFVHQ+ ++ R + GD E VEF+ E +K EA + GP G
Sbjct: 42 YGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG 100
>UniRef50_Q82WG3 Cluster: Cold-shock DNA-binding domain; n=5;
Bacteria|Rep: Cold-shock DNA-binding domain -
Nitrosomonas europaea
Length = 204
Score = 42.3 bits (95), Expect = 0.010
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG 482
++ +GR + KG+GF+TP+ GG+ +FVH + R G+E V +E KG
Sbjct: 1 MRYQGRITTWKDDKGFGFVTPNGGGEQIFVHINSFSSRQRRPEGNELVTYELTVDSKG 58
>UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 189
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +3
Query: 336 FNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
F+ +G+GFI D +DVFVH ++ S G ++VEF+ +++DKGL A V
Sbjct: 8 FDKKRGFGFIRSDKFSEDVFVHLKNIREQQSLSPG-QKVEFDTEQTDKGLSAINV 61
>UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease
with a cold-shock DNA-binding domain; n=2;
Psychrobacter|Rep: Possible guanine-specific
ribonuclease with a cold-shock DNA-binding domain -
Psychrobacter arcticum
Length = 247
Score = 41.9 bits (94), Expect = 0.013
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG-LEATR 497
G+ K +N KG+GFI D+ +DVF H +QM S G + V F + +DK L AT
Sbjct: 4 GKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVQMAQPISEG-QRVYFNSERNDKNQLRATE 62
Query: 498 VT 503
VT
Sbjct: 63 VT 64
>UniRef50_Q1B3F5 Cluster: Cold-shock DNA-binding domain protein;
n=13; Actinomycetales|Rep: Cold-shock DNA-binding domain
protein - Mycobacterium sp. (strain MCS)
Length = 147
Score = 41.9 bits (94), Expect = 0.013
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEATR 497
GR KW++ KG+GF++ +D G+DV+V S L G L + VEF +G +A
Sbjct: 15 GRVKWYDAEKGFGFLSQED-GEDVYVRSSALP-AGVEGLKAGQRVEFGVAAGRRGPQALS 72
Query: 498 VT 503
+T
Sbjct: 73 LT 74
>UniRef50_A1U4X1 Cluster: Putative uncharacterized protein; n=1;
Marinobacter aquaeolei VT8|Rep: Putative uncharacterized
protein - Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
(strain DSM 11845))
Length = 214
Score = 41.9 bits (94), Expect = 0.013
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLE 488
+ ++G +N AKG+GFITP++GG+ +F H S Q G S + V + K+ L
Sbjct: 1 MNQKGLLTSWNDAKGFGFITPENGGERLFAHISAYQGRGRPSASRKVVYAQTKDEKGRLR 60
Query: 489 AT 494
A+
Sbjct: 61 AS 62
>UniRef50_A4VQF2 Cluster: Cold-shock DNA-binding domain protein;
n=10; Pseudomonas|Rep: Cold-shock DNA-binding domain
protein - Pseudomonas stutzeri (strain A1501)
Length = 235
Score = 41.5 bits (93), Expect = 0.017
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL 413
++RRG K +N KG+GFI P+ GG+++FVH S +
Sbjct: 1 MERRGTLKSWNDDKGFGFIRPEQGGEELFVHISAV 35
>UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:
CG9705-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 143
Score = 41.5 bits (93), Expect = 0.017
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +3
Query: 243 AEMQFPLPV----SRXXXXXXXXXXGVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSV 410
A +Q P P+ +R G K F+ KG GFITP+ GG+DVF H S
Sbjct: 27 ASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVSD 86
Query: 411 LQMPGFRSLGDE 446
++ GDE
Sbjct: 87 IEGEYVPMPGDE 98
>UniRef50_Q8PK43 Cluster: Integral membrane protein; n=5;
Proteobacteria|Rep: Integral membrane protein -
Xanthomonas axonopodis pv. citri
Length = 206
Score = 41.1 bits (92), Expect = 0.022
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFEC-KESDKGL 485
++ +GR +N KG+GF+TP GG FVH S R E + + +++ K L
Sbjct: 3 MRYQGRLSDWNDHKGFGFVTPHGGGDRAFVHISAFAQQTRRPRDGEIITYAIERDAHKRL 62
Query: 486 EATRVTGPNGTDCHGSDRR 542
AT+V + T +++R
Sbjct: 63 NATQVRWADRTTAARTEQR 81
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 41.1 bits (92), Expect = 0.022
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVL 413
G KWFN KG+GFI+ +D G DVFVH S +
Sbjct: 4 GTVKWFNAEKGFGFISRED-GSDVFVHFSAI 33
>UniRef50_A3XVA6 Cluster: Putative uncharacterized protein; n=1;
Vibrio sp. MED222|Rep: Putative uncharacterized protein
- Vibrio sp. MED222
Length = 84
Score = 40.7 bits (91), Expect = 0.030
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG 425
RG WF++ G+GF PD G DV +H SV++ G
Sbjct: 8 RGYITWFHLENGFGFAKPDHGDIDVLIHISVIEFDG 43
>UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1;
Methylibium petroleiphilum PM1|Rep: Cold-shock
DNA-binding domain - Methylibium petroleiphilum (strain
PM1)
Length = 203
Score = 40.7 bits (91), Expect = 0.030
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATR- 497
G+ K +N +G+GFI P GGQD+FVH R + V FE + G + R
Sbjct: 5 GKLKSWNDERGFGFIDPVHGGQDIFVHIKAFPSGTGRPTVGQAVTFEVELGPNGKKRARS 64
Query: 498 VTGPNGTDCHGSDRRPL 548
V P G R+PL
Sbjct: 65 VQYP----VRGRSRKPL 77
>UniRef50_A0D610 Cluster: Chromosome undetermined scaffold_39, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_39,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 178
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG 425
+++GR K+++ AK +GF+ D+ G DVFVH LQ G
Sbjct: 86 RQKGRMKFYDDAKKYGFLVLDEDGTDVFVHYDDLQAAG 123
>UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Polaromonas sp. JS666|Rep: Cold-shock DNA-binding
domain protein - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 193
Score = 40.3 bits (90), Expect = 0.039
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG 482
G K +N +G GFI D GGQ++FVH S G E + FE + G
Sbjct: 10 GTLKKWNAERGLGFIVADQGGQEIFVHISAFPRDGRLPAVGEPLSFEVEPDRDG 63
>UniRef50_Q03QI4 Cluster: Cold shock protein; n=4;
Lactobacillus|Rep: Cold shock protein - Lactobacillus
brevis (strain ATCC 367 / JCM 1170)
Length = 74
Score = 40.3 bits (90), Expect = 0.039
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFI-TPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEAT 494
G+ K +N +G+GFI TP DG DVFV+ + + GFR L + V+F + +G +A
Sbjct: 4 GKVKSYNEQRGFGFITTPADG--DVFVYYTGIIGEGFRKLEAGQTVQFVIVQGMRGPQAA 61
Query: 495 RVT 503
+VT
Sbjct: 62 KVT 64
>UniRef50_Q0RYK4 Cluster: Probable cold shock protein CspA; n=1;
Rhodococcus sp. RHA1|Rep: Probable cold shock protein
CspA - Rhodococcus sp. (strain RHA1)
Length = 79
Score = 39.9 bits (89), Expect = 0.052
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 339 NVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
N KG+GF PD G VFVH S + GF++L + + +E+E + KG++A
Sbjct: 25 NGEKGFGFTAPDGG---VFVHFSEIAGRGFKTLDEGQHMEYEVSQGQKGVQA 73
>UniRef50_UPI0000D57810 Cluster: PREDICTED: similar to CG9705-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG9705-PA, isoform A - Tribolium castaneum
Length = 121
Score = 39.5 bits (88), Expect = 0.068
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQ 416
G K F KG GFITP+DG +D+FVH S ++
Sbjct: 44 GEIKSFCREKGHGFITPEDGSEDIFVHISDIE 75
>UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein;
n=2; Salinispora|Rep: Cold-shock DNA-binding domain
protein - Salinispora arenicola CNS205
Length = 139
Score = 39.5 bits (88), Expect = 0.068
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATR 497
+G F+ +G+GFI P GG DVFVH + V +E +S++GL+
Sbjct: 4 KGTIVRFDDVRGYGFIAPFGGGDDVFVHANDFGDQRHAVAAGMRVSYEVVQSERGLKVAS 63
Query: 498 V 500
V
Sbjct: 64 V 64
>UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3;
Plasmodium|Rep: Cold-shock protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 150
Score = 39.5 bits (88), Expect = 0.068
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQS-VLQMPGFRSLGDEE 449
K G F+ KG+GFI P+DGG D+FVH + + Q F +E+
Sbjct: 29 KITGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDICQSRTFEVTNEEK 75
>UniRef50_O33052 Cluster: Small cold-shock protein; n=7;
Corynebacterineae|Rep: Small cold-shock protein -
Mycobacterium leprae
Length = 136
Score = 39.1 bits (87), Expect = 0.090
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL-GDEEVEFECKESDKGLEA 491
G+ KW++ KG+GF++ +D G+DV+V S L G L + VEF +G +A
Sbjct: 4 GKVKWYDADKGFGFLSQED-GEDVYVRSSALP-AGVEGLKAGQRVEFGVASGRRGPQA 59
>UniRef50_Q4DP50 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 710
Score = 39.1 bits (87), Expect = 0.090
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVF 395
G++ GRC F +KG+GF+ P+ GG D++
Sbjct: 296 GIRHEGRCVLFRNSKGFGFVAPEVGGPDIY 325
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 38.7 bits (86), Expect = 0.12
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQM--PGF-RSLGDEE 449
+K G WFNV G+ FI +D +D FVHQ+V++ P + S+GD E
Sbjct: 94 MKVLGIVTWFNVRNGYVFINRNDTKEDTFVHQTVIKKNNPKYLHSVGDGE 143
>UniRef50_Q607Y7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Methylococcus capsulatus|Rep: Cold-shock
DNA-binding domain protein - Methylococcus capsulatus
Length = 305
Score = 38.7 bits (86), Expect = 0.12
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQ-MPGFRSLGDEEVEFECKESDKG 482
G + G F KG+GFITPD+GG + F H S L + + F +DKG
Sbjct: 234 GAEISGTVLSFFHEKGFGFITPDNGGDNFFFHVSDLTGIEASDVCAGLRISFNAGRNDKG 293
Query: 483 LEATRV 500
L A +
Sbjct: 294 LAAHNI 299
>UniRef50_Q5Z0N3 Cluster: Putative cold shock protein; n=1; Nocardia
farcinica|Rep: Putative cold shock protein - Nocardia
farcinica
Length = 89
Score = 38.7 bits (86), Expect = 0.12
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQ-DVFVHQSVLQMPGFRSL 437
G WF+ KG+GFI P +G + VFV S ++M G+R+L
Sbjct: 17 GTVAWFDAPKGFGFIEPAEGPRGPVFVDFSSIEMSGYRTL 56
>UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1;
Ralstonia eutropha JMP134|Rep: Cold-shock protein,
DNA-binding - Ralstonia eutropha (strain JMP134)
(Alcaligenes eutrophus)
Length = 195
Score = 38.7 bits (86), Expect = 0.12
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQS 407
G K +N KG+GFI P +GG+D+FVH S
Sbjct: 14 GTLKSWNKDKGFGFIAPSNGGRDIFVHIS 42
>UniRef50_Q024L3 Cluster: Cold-shock DNA-binding domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: Cold-shock
DNA-binding domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 144
Score = 38.7 bits (86), Expect = 0.12
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 345 AKGWGFITPDDGGQDVFVHQSVL 413
AKG+GF+ PDDGG+D+F H S L
Sbjct: 79 AKGFGFLRPDDGGRDIFFHVSRL 101
>UniRef50_A6W4V4 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Kineococcus radiotolerans SRS30216|Rep:
Putative cold-shock DNA-binding domain protein -
Kineococcus radiotolerans SRS30216
Length = 156
Score = 38.7 bits (86), Expect = 0.12
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVH-QSVLQMPGFRSLGDEEVEFECKESDKGLEAT 494
+G+ + F+ +G+GFIT D ++VF H + V+ + L V+F + D+G +AT
Sbjct: 6 KGKVRSFDDGRGFGFITSPDCPENVFFHVKDVVDLEA-EDLEGASVQFTLDQGDRGYKAT 64
Query: 495 RVTGPNGTDCHGSDR 539
V P G+ G R
Sbjct: 65 DVR-PLGSAGRGPSR 78
>UniRef50_Q9HP26 Cluster: Cold shock protein; n=11;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 69
Score = 38.7 bits (86), Expect = 0.12
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPD----DGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLE 488
G+ +FN G+GFI+ D D +DVF H + P +EVEF+ + S KG
Sbjct: 4 GKVDFFNDTGGYGFISTDADDVDDDEDVFFHMEDVGGPDLEE--GQEVEFDIESSPKGPR 61
Query: 489 ATRV 500
AT +
Sbjct: 62 ATNL 65
>UniRef50_A4KQU6 Cluster: Cold shock protein; n=7; Francisella
tularensis|Rep: Cold shock protein - Francisella
tularensis subsp. holarctica 257
Length = 143
Score = 37.9 bits (84), Expect = 0.21
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATR 497
+G K++N KG+GFI ++ +D F + + P + G ++VEFE +S KG +A
Sbjct: 2 QGIVKFYNKDKGYGFIYSEESEKDFFFSINDWKNPTVPN-GSDDVEFEVAQSKKGEKAIN 60
Query: 498 V 500
+
Sbjct: 61 I 61
>UniRef50_A3X259 Cluster: Cold shock protein; n=1; Nitrobacter sp.
Nb-311A|Rep: Cold shock protein - Nitrobacter sp.
Nb-311A
Length = 62
Score = 37.9 bits (84), Expect = 0.21
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 345 AKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEA 491
A+G FI P+ GG+DVFVH S ++ G SL + ++V E + ++G E+
Sbjct: 5 AEGLRFIEPESGGKDVFVHISAVERAGLSSLSEGDKVSHEVVQ-NRGKES 53
>UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp.
CCS2|Rep: Cold shock protein - Roseobacter sp. CCS2
Length = 151
Score = 37.5 bits (83), Expect = 0.28
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKGLEATRV 500
KWF+ +G+GF+ D D +HQ++L G S+ + VEF + ++ G + +
Sbjct: 2 KWFDAYRGFGFVVIDGIETDFLLHQNILHGFGRTSIAEGSSVEFAYQSTENGFKIIEI 59
>UniRef50_A1SNP5 Cluster: Cold-shock protein, DNA-binding; n=26;
Actinobacteria (class)|Rep: Cold-shock protein,
DNA-binding - Nocardioides sp. (strain BAA-499 / JS614)
Length = 131
Score = 37.5 bits (83), Expect = 0.28
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
G+ KWF+ KG+GF++ + G DV+V L VEF + +G +A +V
Sbjct: 4 GKVKWFDAEKGFGFLS-QENGPDVYVRSEALPAGTSSLKAGTRVEFGIAQGRRGDQALQV 62
>UniRef50_UPI00006CB6F6 Cluster: ''''Cold-shock'''' DNA-binding
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ''''Cold-shock'''' DNA-binding domain
containing protein - Tetrahymena thermophila SB210
Length = 725
Score = 37.1 bits (82), Expect = 0.36
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG 425
G K+F+ K +GFI DD +D+FVH LQ G
Sbjct: 615 GSLKFFDENKNYGFIVMDDDNRDIFVHYDDLQKAG 649
>UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter
violaceus|Rep: Gsr0488 protein - Gloeobacter violaceus
Length = 65
Score = 37.1 bits (82), Expect = 0.36
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKESDKGLEATRV 500
+WF++ G+G I DD G++VF+ + + G+R++ V FE + G A V
Sbjct: 3 RWFDLQAGYGAIARDDTGEEVFLLFTAIPGEGYRTIAPSTAVHFELAQGPSGPVARNV 60
>UniRef50_Q019N2 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 73
Score = 37.1 bits (82), Expect = 0.36
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDK 479
G KWFN DG +DVFVHQS L M GFRS EV E S +
Sbjct: 10 GTVKWFNF----------DGSEDVFVHQSALTMDGFRSCW--EVRHEAAHSKR 50
>UniRef50_UPI00006CB81E Cluster: conserved hypothetical protein;
n=1; Tetrahymena thermophila SB210|Rep: conserved
hypothetical protein - Tetrahymena thermophila SB210
Length = 1152
Score = 36.7 bits (81), Expect = 0.48
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQM 419
K++GR K+F+ + +GF D+ DVFVH LQ+
Sbjct: 879 KKKGRLKFFDTSNNFGFFNLDEDQSDVFVHLDDLQV 914
>UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1;
Hyphomonas neptunium ATCC 15444|Rep: Cold shock
DNA-binding protein - Hyphomonas neptunium (strain ATCC
15444)
Length = 175
Score = 36.7 bits (81), Expect = 0.48
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL 437
KWFN +G+GF+ D D+FVH + G+ +
Sbjct: 114 KWFNRTRGYGFVLRDGQETDIFVHAVAFRKAGYEDI 149
Score = 35.5 bits (78), Expect = 1.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQ-----DVFVHQSVLQMPGFRSLGDEEVEFEC 464
GR KWF+ AKG+GFI + + DV +H S L+ G + DE + C
Sbjct: 23 GRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYG-ENYADEGAKIVC 74
>UniRef50_A4SJX6 Cluster: Cold-shock protein, DNA-binding; n=2;
Aeromonas|Rep: Cold-shock protein, DNA-binding -
Aeromonas salmonicida (strain A449)
Length = 219
Score = 36.7 bits (81), Expect = 0.48
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPD-DGGQ----DVFVHQSVLQMPGFRSLGDEEVEFE 461
++ +GR +N A+G+GFITP+ +GG+ ++FVH S LQ G E V ++
Sbjct: 1 MRYQGRIASWNEARGFGFITPEQEGGEQQGSELFVHISALQSDGSLPNVGERVSYQ 56
>UniRef50_A3WZM6 Cluster: Cold shock DNA binding protein; n=1;
Nitrobacter sp. Nb-311A|Rep: Cold shock DNA binding
protein - Nitrobacter sp. Nb-311A
Length = 77
Score = 36.7 bits (81), Expect = 0.48
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDK 479
VK RG +N +G+GF+ D +++FVH S + + + +EFE ES++
Sbjct: 8 VKYRGTVVHWNAERGFGFVQRDTDQREIFVHISEVDEAYESLVLGQRIEFEIAESER 64
>UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 433
Score = 36.7 bits (81), Expect = 0.48
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG 425
GR K+F+ K +GFI D+ D+FVH LQ G
Sbjct: 347 GRLKFFDEQKNYGFIVMDEDKSDIFVHLDDLQKAG 381
>UniRef50_Q0KYJ4 Cluster: Cold-shock DNA-binding domain protein;
n=7; Shewanella|Rep: Cold-shock DNA-binding domain
protein - Shewanella baltica OS195
Length = 219
Score = 36.3 bits (80), Expect = 0.64
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPD-DGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG 482
RG +N KG+GFI P+ + QDVF+H SVL+ + + + + F+ + + G
Sbjct: 5 RGVLVRWNDEKGFGFIQPEKNAAQDVFIHISVLKKMARKPIVGDSILFQTEVQNDG 60
>UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. MED193|Rep: Putative uncharacterized
protein - Roseobacter sp. MED193
Length = 463
Score = 36.3 bits (80), Expect = 0.64
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDK 479
+G+ K F KG+GFI D +DVF H + ++ R E V+F+ ES +
Sbjct: 2 QGKIKAFIHDKGFGFIEVDGQSEDVFFHITTVKDSSVRCAVGEIVDFDAAESKR 55
>UniRef50_UPI000150A0B6 Cluster: hypothetical protein
TTHERM_00340170; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00340170 - Tetrahymena
thermophila SB210
Length = 864
Score = 35.9 bits (79), Expect = 0.84
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG 425
K +G K+F+ K +GFI D+ D+FVH LQ G
Sbjct: 618 KYKGTLKFFDQDKNYGFIVEDESRTDIFVHFDDLQKAG 655
>UniRef50_A0DVR0 Cluster: Chromosome undetermined scaffold_66, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_66,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 360
Score = 35.9 bits (79), Expect = 0.84
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG 425
+ G+ K+F+ K +GFI D DVFVH LQ G
Sbjct: 265 RETGKLKFFDEQKSYGFIVLDSDNSDVFVHLDDLQRAG 302
>UniRef50_Q72AY2 Cluster: Cold shock domain protein; n=3;
Desulfovibrio vulgaris subsp. vulgaris|Rep: Cold shock
domain protein - Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB8303)
Length = 178
Score = 35.1 bits (77), Expect = 1.5
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQ-MPGFRSLGDEEVEFECKESDKGLEAT 494
+G+ +N +G+GFI+PDDG VF H S + +G+ + + S KG A+
Sbjct: 4 QGKIAQWNDERGFGFISPDDGSPRVFAHISAFRSRHPLPEVGERVLYYLGPPSPKGSRAS 63
Query: 495 RV 500
V
Sbjct: 64 VV 65
>UniRef50_Q2RY07 Cluster: Cold-shock DNA-binding domain protein;
n=2; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 882
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSL 437
G + RG K ++ KG G+I PD G D+ + ++VL+ G L
Sbjct: 815 GPEIRGTVKHYDPIKGRGYIIPDGKGSDILIEKAVLKACGMGRL 858
>UniRef50_Q1K0A5 Cluster: Cold-shock DNA-binding domain protein;
n=1; Desulfuromonas acetoxidans DSM 684|Rep: Cold-shock
DNA-binding domain protein - Desulfuromonas acetoxidans
DSM 684
Length = 214
Score = 35.1 bits (77), Expect = 1.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVH 401
+++RG +N KG+GFI P+ G + +FVH
Sbjct: 8 MRKRGTITSWNKDKGYGFILPNSGSKQIFVH 38
>UniRef50_Q4GYD7 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 778
Score = 35.1 bits (77), Expect = 1.5
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGL 485
G + GRC F K +GFI PD G DV+ + ++ R + + + +
Sbjct: 230 GRRHTGRCVLFRQNKNFGFIAPDIGNPDVYFTRESIEFTFTRRVLEAFFGMPVSANAQHR 289
Query: 486 EATRVTGPNGTDCHGSDRR 542
E R G + H RR
Sbjct: 290 EGGRDDGVDSRQSHRRQRR 308
>UniRef50_UPI0000E480B9 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 266
Score = 34.7 bits (76), Expect = 1.9
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 270 SRXXXXXXXXXXGVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE 449
+R G ++G F +KG GFI+ DD G +F+H S ++ GD
Sbjct: 39 TRTTSVSRVASEGPLKKGTIAEFERSKGHGFISSDDDGSRIFLHISDIEGEYVPVAGDRV 98
Query: 450 VEFEC 464
EC
Sbjct: 99 EYREC 103
>UniRef50_Q8EIU8 Cluster: Cold shock domain family protein; n=7;
Shewanella|Rep: Cold shock domain family protein -
Shewanella oneidensis
Length = 203
Score = 34.7 bits (76), Expect = 1.9
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPD-DGGQDVFVHQSVLQM 419
RG +N KG+GFI P+ G +DVF+H S L+M
Sbjct: 5 RGVLVRWNEEKGFGFIQPEQSGARDVFIHISALKM 39
>UniRef50_Q5PBP1 Cluster: Cold shock protein; n=7;
Anaplasmataceae|Rep: Cold shock protein - Anaplasma
marginale (strain St. Maries)
Length = 92
Score = 34.7 bits (76), Expect = 1.9
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDD-------------GGQDVFVHQSVLQMPGFRSLGD-EEVEF 458
G KWF+V KG+GFI D G +DVFVH + LQ +L + + V +
Sbjct: 14 GHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRVRY 73
Query: 459 ECKESDKGLEATRV 500
+ ES+ + A +
Sbjct: 74 QLDESNGKVSAVNL 87
>UniRef50_Q7WXG5 Cluster: Putative uncharacterized protein; n=1;
Ralstonia eutropha H16|Rep: Putative uncharacterized
protein - Ralstonia eutropha (strain ATCC 17699 / H16 /
DSM 428 / Stanier 337)(Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier337))
Length = 191
Score = 34.7 bits (76), Expect = 1.9
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFEC-KESDKGL 485
+K+ G+ K ++ KG+GFI +DVF H + LQ + V FE K D +
Sbjct: 1 MKKAGQVKTWHADKGFGFIDVYADMKDVFFHVTALQTRAVTPTPGDRVSFELGKGKDGRI 60
Query: 486 EATRVTGPNGTDCHGSDRRPL 548
+A V G SD PL
Sbjct: 61 QALNV-AIVGAPKSRSDASPL 80
>UniRef50_A0YEF6 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 84
Score = 34.7 bits (76), Expect = 1.9
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGP 509
KWF K GF+ + GG D+ V ++ L F +G VEFEC +GL A +V
Sbjct: 7 KWFQ-DKESGFLD-NGGGADIMVRKTDLLNCQFLKVG-ATVEFECHSDKRGLVAKKVKLS 63
Query: 510 NGTDCHGSDR 539
N S+R
Sbjct: 64 NQKRAQHSNR 73
>UniRef50_Q15SJ6 Cluster: Cold-shock DNA-binding domain protein;
n=5; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Pseudoalteromonas atlantica (strain T6c /
BAA-1087)
Length = 237
Score = 34.3 bits (75), Expect = 2.6
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFE-CKESDKGLEAT 494
+G+ +N KG+GF+ P+ GG+ VFVH R + + + +E +ES +A
Sbjct: 4 QGKVFNWNDDKGFGFVEPNGGGERVFVHIKAFTPRSRRPVDGDVITYELVRESHNRCKAE 63
Query: 495 RVTGPNG 515
+ G
Sbjct: 64 NIQFARG 70
>UniRef50_A1TSW1 Cluster: Cold-shock DNA-binding domain protein;
n=2; Acidovorax avenae subsp. citrulli AAC00-1|Rep:
Cold-shock DNA-binding domain protein - Acidovorax
avenae subsp. citrulli (strain AAC00-1)
Length = 224
Score = 34.3 bits (75), Expect = 2.6
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 336 FNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG 482
+N A+G+GFI P GG VFVH Q R + V F + G
Sbjct: 10 WNDARGFGFIEPLQGGDPVFVHIKAFQGGAPRPQAGQRVRFAVEAGPGG 58
>UniRef50_A5KIG0 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 735
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 345 AKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEF 458
A+G+GF+TP+DG D+F+ + L G GD EVE+
Sbjct: 112 ARGFGFVTPEDGTDDIFIPEECL---GNAFQGD-EVEY 145
>UniRef50_Q9WDD3 Cluster: Putative uncharacterized protein; n=1;
Banana bunchy top virus|Rep: Putative uncharacterized
protein - Banana bunchy top virus
Length = 63
Score = 33.5 bits (73), Expect = 4.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 114 YIFNDRSIRLTKCLLFMQRMYYTKR*YLWCLL 209
YI N RSI L +CL M+ K+ Y+WC+L
Sbjct: 4 YINNIRSIMLMRCLRKMKYTQIHKKTYMWCIL 35
>UniRef50_Q8D4D0 Cluster: Predicted membrane protein; n=3;
Vibrio|Rep: Predicted membrane protein - Vibrio
vulnificus
Length = 198
Score = 33.5 bits (73), Expect = 4.5
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG 482
+G+ +N KG+GFI+ G VF H S + G+R + V F E KG
Sbjct: 4 KGQIIEWNDEKGYGFISAIGGELKVFFHISSVTNRGYRPKIKDNVTFNVAEDKKG 58
>UniRef50_Q84IJ3 Cluster: Cold shock protein; n=1; Janthinobacterium
sp. J3|Rep: Cold shock protein - Janthinobacterium sp.
J3
Length = 174
Score = 33.5 bits (73), Expect = 4.5
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKG 482
++ +GR +N +G+GFI + + F+H S L+ R L V +E + DKG
Sbjct: 1 MRLQGRVIEWNDERGFGFIIQNGTSERTFLHISALRKTKGRPLLGSLVTYEIRRDDKG 58
>UniRef50_Q4AG52 Cluster: Cold-shock protein, DNA-binding; n=3;
Bacteroidetes/Chlorobi group|Rep: Cold-shock protein,
DNA-binding - Chlorobium phaeobacteroides BS1
Length = 149
Score = 33.5 bits (73), Expect = 4.5
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEAT 494
R G +FN KG+GFI + + VFVH + L P + V FE + KG A
Sbjct: 87 RNGVVTFFNETKGFGFIRDLETQESVFVHVNNLIEP---IKDNNMVSFEVEMGPKGPSAF 143
Query: 495 RV 500
RV
Sbjct: 144 RV 145
>UniRef50_Q248G5 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 452
Score = 33.5 bits (73), Expect = 4.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGF-RSLGDEEVEFECK 467
K G K+F+ K +GF D G D+FV+ L+ G + + E VE + K
Sbjct: 303 KVTGSLKFFDEKKNFGFFVLDSDGSDIFVYYDDLEQAGITKKMLKESVEKKTK 355
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein CspSt
- Streptococcus thermophilus
Length = 21
Score = 33.5 bits (73), Expect = 4.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 315 RRGRCKWFNVAKGWGFITPDD 377
+ G KWFN KG+GFIT +D
Sbjct: 1 KNGTVKWFNAEKGFGFITSED 21
>UniRef50_Q48AJ7 Cluster: Cold-shock DNA-binding domain family
protein; n=1; Colwellia psychrerythraea 34H|Rep:
Cold-shock DNA-binding domain family protein - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 201
Score = 33.1 bits (72), Expect = 5.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 330 KWFNVAKGWGFITPDDGGQDVFVHQSVLQ 416
+W N K +GFITP+ G +F+H++ L+
Sbjct: 9 RW-NTDKAFGFITPNGSGDTIFIHKTALK 36
>UniRef50_Q93NE9 Cluster: CspA; n=2; Neisseria gonorrhoeae|Rep: CspA
- Neisseria gonorrhoeae
Length = 192
Score = 33.1 bits (72), Expect = 5.9
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
G KW++ K +GFI +DG + F + +PG + V FE E +GL A +V
Sbjct: 3 GFVKWYSYEKDFGFIFGEDGHEYFFRKSAGSDIPG------QIVNFEPFEHSRGLRARKV 56
Query: 501 TGPNGTD 521
+ D
Sbjct: 57 GNIHNPD 63
>UniRef50_Q1ZDW9 Cluster: Cold-shock DNA-binding domain protein;
n=1; Psychromonas sp. CNPT3|Rep: Cold-shock DNA-binding
domain protein - Psychromonas sp. CNPT3
Length = 208
Score = 33.1 bits (72), Expect = 5.9
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKE-SDKGL 485
++ +G+ +N KG+GF+ + GG FVH Q+ R + + + +E + +D+
Sbjct: 1 MRSQGKILNWNDDKGFGFVVSNAGGVSAFVHIKSFQVNARRPVNGDVITYELVQGNDQRY 60
Query: 486 EATRV 500
+A +V
Sbjct: 61 QAKQV 65
>UniRef50_A6FGU4 Cluster: Cold shock domain family protein; n=1;
Moritella sp. PE36|Rep: Cold shock domain family protein
- Moritella sp. PE36
Length = 220
Score = 33.1 bits (72), Expect = 5.9
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRS--LGDEEVEFECKESDKGLEA 491
+G+ + AK +GFI DDG + F+H S L S + D VEFE + KGL A
Sbjct: 2 KGKIISYISAKKFGFICGDDG-ESYFLHVSSLLDKANESKLVKDVVVEFEPTTTPKGLAA 60
Query: 492 TRVTGPN 512
+V P+
Sbjct: 61 KQVHVPD 67
>UniRef50_A0NS44 Cluster: Cold-shock DNA-binding domain protein;
n=1; Stappia aggregata IAM 12614|Rep: Cold-shock
DNA-binding domain protein - Stappia aggregata IAM 12614
Length = 66
Score = 33.1 bits (72), Expect = 5.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEV 452
G KWF+ +G G I P D G+D+ V S L+ G +L + ++
Sbjct: 4 GNVKWFDNRRGIGTIEPQD-GEDILVDISALRRSGIDTLTEGQL 46
>UniRef50_Q8A6J7 Cluster: Cold shock protein, putative DNA-binding
protein; n=4; Bacteroidales|Rep: Cold shock protein,
putative DNA-binding protein - Bacteroides
thetaiotaomicron
Length = 152
Score = 32.7 bits (71), Expect = 7.8
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATR 497
RGR ++FN A+G+GFI G F H V + G S G+ V F+ + KG+ A
Sbjct: 86 RGRVEFFNEARGFGFIKDLAGVDKYFFH--VNNVVGNISEGN-IVTFDLERGVKGMNAVN 142
Query: 498 V 500
+
Sbjct: 143 I 143
>UniRef50_Q88Q61 Cluster: Cold shock DNA-binding domain protein;
n=1; Pseudomonas putida KT2440|Rep: Cold shock
DNA-binding domain protein - Pseudomonas putida (strain
KT2440)
Length = 246
Score = 32.7 bits (71), Expect = 7.8
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 500
G + F KG+GFI DD G+ FVH + + G + V FE + KG A +V
Sbjct: 14 GVVRSFMPEKGFGFIQGDD-GRSYFVH--IKNVEGGELFDGQSVAFEGQPGPKGYRAVKV 70
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,197,282
Number of Sequences: 1657284
Number of extensions: 11189088
Number of successful extensions: 24353
Number of sequences better than 10.0: 253
Number of HSP's better than 10.0 without gapping: 23487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24249
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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