Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_L03
(651 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 146 2e-35
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 146 2e-35
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 146 2e-35
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 70 2e-12
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 69 4e-12
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 69 4e-12
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 40 0.003
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 40 0.003
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 40 0.003
X13331-1|CAA31709.1| 429|Drosophila melanogaster knirps protein... 29 7.2
AY118798-1|AAM50658.1| 429|Drosophila melanogaster GH19318p pro... 29 7.2
AE014296-3401|AAF51629.2| 429|Drosophila melanogaster CG4717-PA... 29 7.2
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 146 bits (355), Expect = 2e-35
Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV+QM GFRSLG+ EEVEFEC+ + +G
Sbjct: 36 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG 95
Query: 483 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCG 590
LEATRV+ +G C GS RP R R++RCYNCG
Sbjct: 96 LEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCG 131
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 589 GEFANHIAAKCXIGPQPKRCH 651
GEFANHIA++C +GPQPKRCH
Sbjct: 131 GEFANHIASECALGPQPKRCH 151
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 146 bits (355), Expect = 2e-35
Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV+QM GFRSLG+ EEVEFEC+ + +G
Sbjct: 36 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG 95
Query: 483 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCG 590
LEATRV+ +G C GS RP R R++RCYNCG
Sbjct: 96 LEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCG 131
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 589 GEFANHIAAKCXIGPQPKRCH 651
GEFANHIA++C +GPQPKRCH
Sbjct: 131 GEFANHIASECALGPQPKRCH 151
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 146 bits (355), Expect = 2e-35
Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Frame = +3
Query: 306 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 482
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV+QM GFRSLG+ EEVEFEC+ + +G
Sbjct: 36 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG 95
Query: 483 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCG 590
LEATRV+ +G C GS RP R R++RCYNCG
Sbjct: 96 LEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCG 131
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 589 GEFANHIAAKCXIGPQPKRCH 651
GEFANHIA++C +GPQPKRCH
Sbjct: 131 GEFANHIASECALGPQPKRCH 151
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/89 (44%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL---QMPGFRSLGD-EEVEFECKESDK 479
K G KWFNV G+GFI +D +DVFVHQS + RS+GD E VEF+ +K
Sbjct: 62 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 480 GLEATRVTGPNGTDCHGSDRRPLSKIRFR 566
G EA VTGP+G GS + FR
Sbjct: 122 GNEAANVTGPSGEPVRGSQFAADKRRNFR 150
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 69.3 bits (162), Expect = 4e-12
Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI +D +DVFVHQS + RS+GD E VEF+ +
Sbjct: 61 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGE 120
Query: 477 KGLEATRVTGPNGTDCHGSDRRPLSKIRFR 566
KG EA VTGP+G GS + FR
Sbjct: 121 KGNEAANVTGPSGEPVRGSQFAADKRRNFR 150
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 69.3 bits (162), Expect = 4e-12
Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 476
K G KWFNV G+GFI +D +DVFVHQS + RS+GD E VEF+ +
Sbjct: 61 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGE 120
Query: 477 KGLEATRVTGPNGTDCHGSDRRPLSKIRFR 566
KG EA VTGP+G GS + FR
Sbjct: 121 KGNEAANVTGPSGEPVRGSQFAADKRRNFR 150
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE 446
G K F+ KG GFITP+ GG+DVF H S ++ GDE
Sbjct: 57 GMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDE 98
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE 446
G K F+ KG GFITP+ GG+DVF H S ++ GDE
Sbjct: 57 GMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDE 98
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE 446
G K F+ KG GFITP+ GG+DVF H S ++ GDE
Sbjct: 57 GMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDE 98
>X13331-1|CAA31709.1| 429|Drosophila melanogaster knirps protein
protein.
Length = 429
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 363 ITPDDGGQDVFVHQSVLQMPGFRSLG--DEEVEFECKESDKGLEATRVTGPNGTDCHGSD 536
++ +G D+ + S + F G D+EVE + LEA +T + + H +
Sbjct: 325 VSAQEGPMDLSMKTSRSSVHSFNDSGSEDQEVEVAPRRKFYQLEAECLTTSSSSSSHSAA 384
Query: 537 RRPLSKIRFRKIRCYNCGGVR*SHSG 614
P + +++ GG +H G
Sbjct: 385 HSPNTTTAHAEVKRQKLGGAEATHFG 410
>AY118798-1|AAM50658.1| 429|Drosophila melanogaster GH19318p
protein.
Length = 429
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 363 ITPDDGGQDVFVHQSVLQMPGFRSLG--DEEVEFECKESDKGLEATRVTGPNGTDCHGSD 536
++ +G D+ + S + F G D+EVE + LEA +T + + H +
Sbjct: 325 VSAQEGPMDLSMKTSRSSVHSFNDSGSEDQEVEVAPRRKFYQLEAECLTTSSSSSSHSAA 384
Query: 537 RRPLSKIRFRKIRCYNCGGVR*SHSG 614
P + +++ GG +H G
Sbjct: 385 HSPNTTTAHAEVKRQKLGGAEATHFG 410
>AE014296-3401|AAF51629.2| 429|Drosophila melanogaster CG4717-PA
protein.
Length = 429
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 363 ITPDDGGQDVFVHQSVLQMPGFRSLG--DEEVEFECKESDKGLEATRVTGPNGTDCHGSD 536
++ +G D+ + S + F G D+EVE + LEA +T + + H +
Sbjct: 325 VSAQEGPMDLSMKTSRSSVHSFNDSGSEDQEVEVAPRRKFYQLEAECLTTSSSSSSHSAA 384
Query: 537 RRPLSKIRFRKIRCYNCGGVR*SHSG 614
P + +++ GG +H G
Sbjct: 385 HSPNTTTAHAEVKRQKLGGAEATHFG 410
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,614,874
Number of Sequences: 53049
Number of extensions: 553894
Number of successful extensions: 1254
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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