Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_L03
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 85 5e-17
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 85 5e-17
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 85 5e-17
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 85 5e-17
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 74 8e-14
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 73 2e-13
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 67 9e-12
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 55 5e-08
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 55 5e-08
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 28 6.6
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 28 6.6
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 84.6 bits (200), Expect = 5e-17
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 491
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 83
Query: 492 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCG 590
V+G G GS PL + + +RC+ CG
Sbjct: 84 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG 117
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 84.6 bits (200), Expect = 5e-17
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 491
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 114
Query: 492 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCG 590
V+G G GS PL + + +RC+ CG
Sbjct: 115 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG 148
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 84.6 bits (200), Expect = 5e-17
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 491
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 114
Query: 492 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCG 590
V+G G GS PL + + +RC+ CG
Sbjct: 115 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG 148
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 84.6 bits (200), Expect = 5e-17
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +3
Query: 321 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 491
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 114
Query: 492 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCG 590
V+G G GS PL + + +RC+ CG
Sbjct: 115 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG 148
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 74.1 bits (174), Expect = 8e-14
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Frame = +3
Query: 312 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL--QMPG--FRSLGD-EEVEFECKESD 476
K +G KWFNV G+GFI D +D+FVHQ+ + P RSLGD EEV F+ E
Sbjct: 20 KVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGS 79
Query: 477 KGLEATRVTGPNGTDCHGS 533
KGLEA VTGP+G GS
Sbjct: 80 KGLEAASVTGPDGGPVQGS 98
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 72.5 bits (170), Expect = 2e-13
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG-----FRSLG-DEEVEFECKESDK 479
+G+ KW++V + +GFI+ +DG +D+FVHQ+ + R+LG DEEV F+ E
Sbjct: 67 QGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKN 126
Query: 480 GLEATRVTGPNGTDCHGSDRRPLSKIRFRKIR 575
G EA VTGPNG + GS R RFRK R
Sbjct: 127 GPEAANVTGPNGDNVIGSRYRHKLLSRFRKNR 158
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 67.3 bits (157), Expect = 9e-12
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG-----FRSLGD-EEVEFECKESDK 479
+G+ KW++V + +GFI+ DG +DVFVHQ+ + R+L D EEV F+ +
Sbjct: 65 QGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKN 124
Query: 480 GLEATRVTGPNGTDCHGSDRRPLSKIRFRKIR 575
G EA VTGP G + GS R RFRK R
Sbjct: 125 GPEAANVTGPAGVNVSGSKYRHQLLSRFRKNR 156
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 54.8 bits (126), Expect = 5e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFIT---PDDGGQDVFVHQSVLQMPG-----FRSLGDEE-VEFECKE 470
+G KWF+V +GF+ P D +D FVHQ+ + R+L D+E V F+ E
Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149
Query: 471 SDKGLEATRVTGPNGTDCHGS 533
KG EA VTGP+G + GS
Sbjct: 150 GLKGPEAANVTGPDGENVRGS 170
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 54.8 bits (126), Expect = 5e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Frame = +3
Query: 318 RGRCKWFNVAKGWGFIT---PDDGGQDVFVHQSVLQMPG-----FRSLGDEE-VEFECKE 470
+G KWF+V +GF+ P D +D FVHQ+ + R+L D+E V F+ E
Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149
Query: 471 SDKGLEATRVTGPNGTDCHGS 533
KG EA VTGP+G + GS
Sbjct: 150 GLKGPEAANVTGPDGENVRGS 170
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 396 VHQSVLQMPGFRSLG 440
VHQSV QMPG+ S G
Sbjct: 1232 VHQSVYQMPGYESYG 1246
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 396 VHQSVLQMPGFRSLG 440
VHQSV QMPG+ S G
Sbjct: 1246 VHQSVYQMPGYESYG 1260
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 441 DEEVEFECKESDKGLEATRVTGPNGTDCHGSDRR 542
DEE E + + E + TG N T C+G +R+
Sbjct: 36 DEECRHEEDKDESNTENLKNTGENATACNGINRK 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,552
Number of Sequences: 27780
Number of extensions: 265538
Number of successful extensions: 568
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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