Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L03
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 157 YSCRGCIIRSGDICGAC*KNFSYNEREG 240
           Y C G  +   D+ G+  +N ++  REG
Sbjct: 202 YLCPGMALSQFDLMGSPYRNLTFVRREG 229


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 487 KRHVLQVPMEPIVMVPIDDPCLRSD 561
           ++    VP++P+V  PI D    SD
Sbjct: 198 QKRKFNVPLQPVVSDPIFDKKAMSD 222


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 487 KRHVLQVPMEPIVMVPIDDPCLRSD 561
           ++    VP++P+V  PI D    SD
Sbjct: 198 QKRKFNVPLQPVVSDPIFDKKAMSD 222


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 108 NIYIFNDRSIRLTKCLLFMQRMYYTKR*YLWCLL 209
           N+   NDR  ++TKC    +  Y   +  L CLL
Sbjct: 551 NLASNNDRIRQVTKCKATNEETYRGGKGALSCLL 584


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 108 NIYIFNDRSIRLTKCLLFMQRMYYTKR*YLWCLL 209
           N+   NDR  ++TKC    +  Y   +  L CLL
Sbjct: 551 NLASNNDRIRQVTKCKATNEETYRGGKGALSCLL 584


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 108 NIYIFNDRSIRLTKCLLFMQRMYYTKR*YLWCLL 209
           N+   NDR  ++TKC    +  Y   +  L CLL
Sbjct: 551 NLASNNDRIRQVTKCKATNEETYRGGKGALSCLL 584


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 309 VKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQS 407
           ++R  RC   N+     F+T  DG  DV  HQS
Sbjct: 156 LERAFRCLGNNLT---AFLTTLDGVNDVVQHQS 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,133
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)