Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L01
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    28   1.0  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   1.0  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   1.3  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    23   5.1  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   5.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.2  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 389 ASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTD 502
           A+ + K +++   + M + DP  S TTL S V  ++ +
Sbjct: 602 ATSYNKSIKDMSSSDMAFSDPAYSGTTLRSSVDLNTPE 639


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +2

Query: 377 RLRDASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTDKRVKVEQ 523
           ++RD     K+V++ +KT ++ +        L+ E+Q  S  +RVK+++
Sbjct: 323 KIRDEMGIGKKVEDEQKTVVEEIPEMDEEERLDQELQDLSEAERVKLKR 371


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 372 MHGSQIRRLLLLGPPDFEYAMETLKVSA 289
           M   ++ RLL +GPP+FE   + +K+ A
Sbjct: 700 MRPGRLDRLLYVGPPNFEARKQIVKIQA 727


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 23.0 bits (47), Expect(2) = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 525 TCSTFTRLSVELVCTSDSKVVELLP 451
           T +T   LSV+L    D KVVE  P
Sbjct: 749 TDTTLQNLSVDLATLGDLKVVERPP 773



 Score = 21.0 bits (42), Expect(2) = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 339 LGPPDFEYAMETLKVSANISA 277
           LGP  F+    T+KVS+  SA
Sbjct: 777 LGPHAFKSVQATVKVSSTESA 797


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 291 QKPSVSPLHTQSQAVLTATAVLSVNHAYPVSEMLQTLRSRCRSARRPLCNTWTLAVVLP 467
           +KPSV     +  + L+++ + SVN   P S +  T+ S       P       A  LP
Sbjct: 123 KKPSVRGRRGRKPSSLSSSTLHSVNEKQPNSSISPTIESSMNKVNLPGAEEQVSATPLP 181


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 290 AETFSVSIAYSKSGGPNSNSRLICEPCISRLRDASDFKKQVQECEKTFMQYLDPGSSSTT 469
           A  F+ ++AY  +    SNS+++ +     + D +D  ++   C   F+ + DP +  +T
Sbjct: 564 AGMFATALAYCGT----SNSKIVRDVLHISVSDVNDDVRRAAVCALGFICFKDPNALIST 619

Query: 470 LE 475
           +E
Sbjct: 620 VE 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,665
Number of Sequences: 5004
Number of extensions: 41005
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)