Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_L01
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 31 0.80
04_03_0069 - 10665455-10666902,10669889-10670138 30 1.8
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380... 29 3.2
04_03_0643 + 18328807-18331969,18332560-18332627 29 4.2
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410... 28 7.4
10_03_0002 - 6858257-6861205 27 9.8
07_03_1436 - 26543846-26546806 27 9.8
07_03_0970 - 23034521-23034928,23036173-23037081 27 9.8
07_03_0386 + 17515931-17516545,17518515-17518946 27 9.8
05_04_0037 - 17399402-17400934 27 9.8
01_05_0256 - 19994072-19995268 27 9.8
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 212 LAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYS---KSGGPNSNSRLI 358
+A+ C D+S FW+ V E++A+TF ++ S K+ N N++++
Sbjct: 326 VAKSCGNDVSRLTFWLSNTVVLREIIAQTFGITRQPSLAMKAFSTNVNAKML 377
>04_03_0069 - 10665455-10666902,10669889-10670138
Length = 565
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 269 PSFPSKNIQWKCLCNSLQR-DNTDKXVGPGRHSLVLSAIITKLSL 138
P+ P + ++W + R D+ D+ V PGR+SLVL ++ + L
Sbjct: 329 PNTP-QYLRWSEIAIKFDRSDHPDRVVHPGRYSLVLDPVVRNVKL 372
>12_02_0272 -
16634765-16635004,16635412-16635457,16636107-16638098,
16639478-16640286
Length = 1028
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 232 FVTAFSETTPTXPWARVAIHLFYQPLSQN 146
F+ + SET PT W R ++L Y LS N
Sbjct: 391 FMGSESETNPTLEWMRHVLNLSYLDLSHN 419
>04_03_0643 + 18328807-18331969,18332560-18332627
Length = 1076
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 537 LSIFTCSTFTRLSVELVCTSDSKVVELLPGSKY-CIKVFSHSCTCFLKSEASRR 379
LSIFT + + +CT + K+ L+ Y IK F+ C+ K S R
Sbjct: 578 LSIFTKGNISCTEIVTICTQNKKLRSLICNESYRSIKQFAPVIDCWFKELPSIR 631
>02_05_0076 +
25637752-25639062,25639221-25639297,25640962-25641095,
25641178-25641242,25641431-25641482,25641912-25641994,
25642128-25642221,25642332-25642861
Length = 781
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -2
Query: 504 LSVE-LVCTSDSKVVELLP-GSKYCIKVFSHS--CTCFLKSEASRRRDMHGSQIRRLLLL 337
+SV+ L+ +S K V L S YC+K FSHS TC + + + + GS ++ L+
Sbjct: 474 ISVQYLLSSSMDKTVRLWHVSSTYCLKTFSHSDYVTCIQFNPVNDKYFISGSLDKKGALV 533
Query: 336 G 334
G
Sbjct: 534 G 534
>10_03_0002 - 6858257-6861205
Length = 982
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 248 IQWKCLCNSLQR-DNTDKXVGPGRHSLVLSAIITKLSL 138
++W + R D+ D+ V PGR+ LVL ++ + L
Sbjct: 752 LRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKL 789
>07_03_1436 - 26543846-26546806
Length = 986
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 269 PSFPSKNIQWKCLCNSLQR-DNTDKXVGPGRHSLVLSAIITKLSL 138
P+ P + ++W + R D+ D+ V PGR+ LVL ++ + L
Sbjct: 750 PNTP-QYLRWSEVAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKL 793
>07_03_0970 - 23034521-23034928,23036173-23037081
Length = 438
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 299 RFLLTSQRRLPSFPSKNIQWKCLCN 225
R + QRR P+ PSK++++ L N
Sbjct: 383 RLMTLCQRRYPALPSKSVEFNSLAN 407
>07_03_0386 + 17515931-17516545,17518515-17518946
Length = 348
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 275 YAEMLAETFSVSIAYSKSGGPNSNSRLICEPCIS 376
+A ML T + +SKS GP+S +RL+ + +S
Sbjct: 64 FATMLYSTPGLWFLWSKSAGPSSATRLLLDANVS 97
>05_04_0037 - 17399402-17400934
Length = 510
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 248 IQWKCLCNSLQR-DNTDKXVGPGRHSLVLSAIITKLSL 138
++W + R D+ D+ V PGR+ LVL ++ + L
Sbjct: 280 LRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKL 317
>01_05_0256 - 19994072-19995268
Length = 398
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 248 IQWKCLCNSLQR-DNTDKXVGPGRHSLVLSAIITKLSL 138
++W + R D+ D+ V PGR+ LVL ++ + L
Sbjct: 168 LRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKL 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,822,385
Number of Sequences: 37544
Number of extensions: 263351
Number of successful extensions: 782
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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