Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_L01
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    31   0.71 
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    31   0.71 
Z49909-8|CAA90111.1|  204|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    28   5.0  

>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 543 NCLSIFTCSTFTRLSVELVCTSDSKVVELLPGSKYCIKVFSH 418
           N L  F+CS +       VCT+D   + +     +CIKVFS+
Sbjct: 709 NILQKFSCSRYLEFP-NGVCTNDKNEILISDNRAHCIKVFSY 749


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 543 NCLSIFTCSTFTRLSVELVCTSDSKVVELLPGSKYCIKVFSH 418
           N L  F+CS +       VCT+D   + +     +CIKVFS+
Sbjct: 709 NILQKFSCSRYLEFP-NGVCTNDKNEILISDNRAHCIKVFSY 749


>Z49909-8|CAA90111.1|  204|Caenorhabditis elegans Hypothetical
           protein C14A4.7a protein.
          Length = 204

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 543 NCLSIFTCSTFTRLSVELVCTSDSKVVE--LLPGSKYCIKVFSHSCTCFLKSEASRRRDM 370
           +CL+    S F  +S  L  TS+S   +  L  G+ +C  +F     C  KS    R+D+
Sbjct: 126 HCLASLLVSFFIFMSGILFITSESYSGDGVLYVGAFFCFLIFGVRIACIFKSLPQLRQDV 185

Query: 369 H 367
           H
Sbjct: 186 H 186


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 263 KREVYAEMLAETFSVSIAYSKSGGPNSNSRLICEPCISRLRDASDFKKQVQEC-EKTFMQ 439
           KR  Y + L    + S  YSKS     ++ LI E C + LRD         EC E+TF  
Sbjct: 676 KRHEYDDSLRRLLNTSFEYSKSRECFHDANLIQEKC-THLRDCC---PNFDECREETFEV 731

Query: 440 YLDPGSSSTTLE-SEVQTSSTDKRVKVEQVKIERQ 541
            ++    S T   +E++     ++ K     + RQ
Sbjct: 732 EVERTIISLTATINEIKQECVKRKAKEAVKNVVRQ 766


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,577
Number of Sequences: 27780
Number of extensions: 234079
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)