Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_K23
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.1  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   7.2  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   7.2  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 417 DQNYLRNASFKKYMLQTQNNIKKIFSSAR 331
           DQNYL N S K      + N +K F SAR
Sbjct: 46  DQNYLLNNSNKNKGSIIEENTRKPFQSAR 74


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 626 LLILHSWPHLLELQFAHGKWHPGHFSSRQSHTFXASFSNMTVVIINSLHFSRSEIF---F 456
           LL+L    ++  +      +  GH  + QS     +F N T  IIN L  +RS  F   F
Sbjct: 189 LLVLFKAVNIGVINVLEHYFEMGHHDAAQSLRIYKTFVNQTEDIINYLSTARSLEFVTKF 248

Query: 455 PV 450
           PV
Sbjct: 249 PV 250


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 447 LFYVHELNF*DQNYLRNASFKKYMLQTQNNIKKIFSSARYYP 322
           L + H L F D     N   K+ ++ T+N+++ +  S +Y P
Sbjct: 140 LNFYHSLGF-DLETAENTGNKRVIIHTENDLQTVQISNKYSP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,424
Number of Sequences: 5004
Number of extensions: 43197
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)