Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_K19
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 36 0.028
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 30 1.4
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 30 1.4
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 30 1.8
01_06_1316 + 36245368-36245507,36247229-36247315,36248334-362484... 30 1.8
08_02_0271 - 15156737-15156868,15157134-15157235,15157342-151574... 29 2.4
01_06_1509 - 37855894-37856679,37856766-37856952,37857508-378575... 29 4.2
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 28 5.6
02_05_0817 + 31994241-31995908 28 5.6
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 28 7.4
08_01_0734 + 6729401-6729743,6729997-6730190,6730275-6730461,673... 28 7.4
07_03_0460 + 18425464-18427473 28 7.4
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 28 7.4
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89... 27 9.8
02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024... 27 9.8
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 507 KREQKWLRML----DNWEAFMSKNYKKVRERCRKGIPASVRPKAWLYLCGGQ 650
+R +KW +M+ +W+ ++ +N V+ R RKGIP +R W + G +
Sbjct: 75 RRIKKWRKMIGVGGSDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSR 126
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 279 PTTPPPPSCGRTNNYKTQFRP*KPP 205
P PPPP RT+N TQ P PP
Sbjct: 270 PPPPPPPMPPRTDNASTQAAPAPPP 294
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Frame = +3
Query: 348 LQKSVKSSGDRSEQADTTSICSSVTTQPDRHGFFGGAQYSPEPKRTVSPSTILKREQKWL 527
L S SS S A + + S F A YSP R + S +R++K
Sbjct: 35 LVASSSSSSSSSSLAASGNSASPAAAAAAASASFSPASYSPHSDRGGTKSPWSRRKRKRP 94
Query: 528 RMLDNWEAFMSKNYKKVRERCRK--------GIPASVRPKAWLYLCG 644
+W S + K+R+ RK G+ +R K W +L G
Sbjct: 95 LSCRHWNHLFSSD-GKLRDGGRKFLKKVRGGGVEPEIRAKVWPFLLG 140
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 238 LQNTVPPVKTAETNSPNKWHREMSSVRILQTQPHSR 131
L T PP + +P HR ++ R L T PH R
Sbjct: 17 LSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQR 52
>01_06_1316 +
36245368-36245507,36247229-36247315,36248334-36248439,
36249028-36249204,36249296-36249375,36249432-36249440,
36249474-36249566,36249788-36249947
Length = 283
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 371 RRSKRAGGYHINMFI---GDYPTGQTRFFRRCPIQSRT*KNCLAEYDIEERTEMASYARQ 541
+RS GG + M + GD G++R C +Q K YD E ++ S R
Sbjct: 15 KRSSSGGGGKVAMCVRSGGDGGAGKSRPSFTCRVQRAVVK---WSYDPTEMSDEYSLPRS 71
Query: 542 LGSVYEQELQESTRKMSKRYTSISEAESMV 631
+ LQE T ++++ S +E ES +
Sbjct: 72 FALCRVRTLQEYTGQLAEEEASAAEEESPI 101
>08_02_0271 -
15156737-15156868,15157134-15157235,15157342-15157419,
15157523-15157616,15157736-15157872,15157989-15158105,
15158470-15158940
Length = 376
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 576 VRERCRKGIPASVRPKAWLYLCG 644
+R RKG+P +RPK WL + G
Sbjct: 102 LRRLIRKGVPPVLRPKVWLSVSG 124
>01_06_1509 -
37855894-37856679,37856766-37856952,37857508-37857580,
37857772-37857816,37858004-37858010
Length = 365
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 471 EPKRTVSPSTILKREQKWLRMLDNWEAFMSKNYKKVRERCRKGIPASVRPKAWLYL 638
E +R VS + R+ K+L ++ E+ + + YK + + G+P VR + L L
Sbjct: 298 ETQRRVSSENVEARKLKYLAEKEHKESTILETYKSLMMQDTTGMPEDVRSERMLAL 353
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 208 AETNSPNKWHREMSSVRILQTQPH-SRRQSQFANKARRRAENK 83
++T+SP++ H +MS + Q H +Q QF N+++ + + +
Sbjct: 752 SDTSSPHQKHHQMSQEKHHWQQKHREEQQQQFQNQSKEQEQER 794
>02_05_0817 + 31994241-31995908
Length = 555
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 528 EAISVLSSISYSARQFF*VLDCIGHLRKNR 439
+ I +LS Y ARQF + D + H+++ R
Sbjct: 151 DVIDILSGTRYKARQFGVLCDVLDHMKRRR 180
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 297 HHAQNTPTTPPPPSCGRTN 241
HHAQ PPPP+ G N
Sbjct: 265 HHAQGNVPPPPPPNAGPPN 283
>08_01_0734 +
6729401-6729743,6729997-6730190,6730275-6730461,
6730880-6731073,6731435-6731827,6731913-6731978,
6732061-6732429,6732517-6732568,6733393-6733397
Length = 600
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/76 (22%), Positives = 32/76 (42%)
Frame = +3
Query: 294 DGLS*KNTEEVRKNNKMSLQKSVKSSGDRSEQADTTSICSSVTTQPDRHGFFGGAQYSPE 473
+ L +T + + K +L+ +V+ + +E++ T S P+R+GF P
Sbjct: 291 ENLGSASTHQETRKRKKALEDAVEEHPEWTEKSITEGDLMSRVCGPERNGFVRSVGKGPT 350
Query: 474 PKRTVSPSTILKREQK 521
P+ P R K
Sbjct: 351 PRDLEMPGKEKYRSTK 366
>07_03_0460 + 18425464-18427473
Length = 669
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 640 HRYNHAFGLTDAGIPFRHLSRTF 572
H+YNH F +TD G + LS++F
Sbjct: 39 HKYNHIFCVTDMGDWYDKLSQSF 61
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +3
Query: 345 SLQKSVKSSGDRSEQADTTSICSSVTTQPDRHGFFGGAQYSPEPKRTVSPSTILKREQKW 524
+L V + DR + + S CS+ T D H S PK PS L R+
Sbjct: 463 NLMYKVLNEYDREDAGSSDSPCST-ETHMDSHD-------SEVPKHMRRPSRTLSRDNFD 514
Query: 525 LRMLDNWEAFMSKNYK 572
L + E FM KN+K
Sbjct: 515 LSSPSSRENFMIKNFK 530
>05_01_0133 +
895107-895280,895960-896271,896815-897081,897161-897265
Length = 285
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -1
Query: 550 ASQLSSIRSHFCSLFNIVLGETVLLGS---GLYWAP 452
AS +S S F S+FN +L E V+LGS G+ W P
Sbjct: 215 ASGVSVEGSFFQSIFNGLLKEGVVLGSVRAGVQWTP 250
>02_05_1196 -
34901320-34901342,34901937-34902041,34902314-34902482,
34902645-34902716,34902788-34902871,34903219-34903317,
34903416-34903515,34903704-34903878,34903985-34904198,
34904727-34904803,34904879-34905048,34905593-34905629,
34905988-34906123,34906658-34906915
Length = 572
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 469 GLYWAPPKKPCLSGWVVTDEHIDVVSACSLRSPELFTLF 353
G Y+AP KP W++TD + + R ++ T F
Sbjct: 391 GYYFAPSGKPYPDNWIITDIIYEFEGSLLSRQNKIVTQF 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,920
Number of Sequences: 37544
Number of extensions: 395971
Number of successful extensions: 1640
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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