Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_K19
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 112 SQTAIVFDYAAVFAVYEHSTFLCATCLVNLS 204
           S+  +V   A  F  Y H T +C+  + +LS
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIESLS 154


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 288  QNTPTTPPPPSCGR 247
            Q  P  PPPPS G+
Sbjct: 1353 QQPPPPPPPPSSGQ 1366


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 372 GDRSEQADTTSICSSVTTQPDR 437
           GD +      S+C+S TT PD+
Sbjct: 622 GDSNMGFLNNSMCTSTTTSPDK 643


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -2

Query: 294 HAQNTPTTPPPPSCGRTNNYKTQFRP*KPPRQIHQTSGTEK 172
           H  +   TP PP C R       FR    P      SGTEK
Sbjct: 555 HRASLSKTPQPPQCPR-------FRKLDSPSDSGIESGTEK 588


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +3

Query: 321 EVRKNNKMSLQKSVKSSGDRSEQADTTSICSSVTTQPDRHGF 446
           + R N   SLQ S+ S       A   S C S    P   GF
Sbjct: 270 KARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGF 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,732
Number of Sequences: 438
Number of extensions: 4435
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)