Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_K13
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 76 2e-14
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032... 76 3e-14
12_01_0499 - 3959843-3960058,3960158-3960235,3960315-3960389,396... 31 0.80
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243... 29 3.2
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 28 5.6
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 28 7.5
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 28 7.5
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 76.2 bits (179), Expect = 2e-14
Identities = 43/148 (29%), Positives = 70/148 (47%)
Frame = +3
Query: 117 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 296
G G T+ + +C SC YK +++ +P I VI NY PP L +++ +
Sbjct: 96 GAGYGTTVELQFCASCSYKGTAMTMKRMLETSFPGIHVILHNYPPPFPKRVLGKLVPILQ 155
Query: 297 MLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISL 476
+ I I++G +IF L P W+ N+ ++ N + L SSGAFE+
Sbjct: 156 VGAIATIMAGDHIFPRLGMVPPPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAFEVYC 215
Query: 477 NNIPLWSKIETGRIPQPSELFQIIDNTL 560
N ++SK+ R P EL +I++ L
Sbjct: 216 NGDLVFSKLAEQRFPSEFELRDLINSRL 243
>01_06_1235 -
35602548-35602594,35603057-35603060,35603186-35603290,
35604274-35604589,35605898-35605968,35606076-35606270
Length = 245
Score = 75.8 bits (178), Expect = 3e-14
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 3/169 (1%)
Frame = +3
Query: 117 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 296
G + G T+ + +C SC Y+ +++ +P I V+ NY PP LS+ + F +
Sbjct: 71 GPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGIHVVLENYPPPFPKRALSKAVPFLQ 130
Query: 297 MLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISL 476
+ + +++G IF P W+ N+ ++ N + L SSGAFE+
Sbjct: 131 VGAMATLMAGDQIFPRFGMVPPPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAFEVYC 190
Query: 477 NNIPLWSKIETGRIPQPSELFQIIDNTL---QFSKMDLPKNLFVQS*KY 614
N ++SK+ R P EL ++I N L QF K +L K F + KY
Sbjct: 191 NGQLVFSKLSEQRFPSEFELRELIGNRLPDSQFGK-NLEKAGFRSANKY 238
>12_01_0499 -
3959843-3960058,3960158-3960235,3960315-3960389,
3960590-3960676,3960764-3960831,3961854-3961941,
3962041-3962141,3962223-3962343,3962647-3962778,
3962880-3962969
Length = 351
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +3
Query: 180 FEDYAGIIQQKYPEISVIGANYDPPGFNM---YLSRIIGFGKM 299
FEDYA + + ++S +GA +DPP N +L+ IIG KM
Sbjct: 294 FEDYA----EAHAKLSNLGAKFDPPKVNEIKDFLTSIIGMEKM 332
>11_06_0655 -
25923171-25923185,25923208-25923432,25923865-25924324,
25924330-25924985
Length = 451
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 336 FAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISL 476
F +N P WSWCL + + + F+++ +E + G F+ SL
Sbjct: 284 FLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLE---VLYGCFDRSL 327
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 255 GFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSW 377
G NM ++ G +LV+M IL G F + PAWW W
Sbjct: 678 GRNMIVANTFGSFALLVVM-ILGG---FIITKESIPAWWIW 714
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 305 HHVYTQRCEYFCLVEQTTTCLVELVP*KQAVCMHDDVLFSK 427
HH+ + E +E++ CL E + QA C+ D + +K
Sbjct: 102 HHLLSLEKEKIARLERSLQCLNEQISFAQAECVEKDAILAK 142
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +3
Query: 396 YACMMMFFLANMIEGQLISSGAFEISLNNIPLWSKIETGRIPQPSELFQIIDNTLQFSKM 575
Y M F +++ + + E+ N P IE IP+P + D F +
Sbjct: 202 YGARKMEFTISVLMLVMATCFFMELGKVNPPAGGVIEGLFIPRPKGDYSTSDAVAMFGSL 261
Query: 576 DLPKNLFVQS 605
+P NLF+ S
Sbjct: 262 VVPHNLFLHS 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,874
Number of Sequences: 37544
Number of extensions: 376900
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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