Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_K08
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    28   1.0  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    27   3.1  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   4.1  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   5.5  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   9.5  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    25   9.5  

>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
 Frame = +3

Query: 228 LIDLETLQDDNIQTKMDQYILREGNTIKIDNVRGQASAVDMKRNKVYIASDDGLNELNST 407
           L+DL+TL D++   K +       +TI+   +     A D +      AS    +E   T
Sbjct: 137 LVDLDTLLDNDQPEKNES---NTASTIRPPWIGNNDHATDKENLLESDASSSNDSESELT 193

Query: 408 DKANFVGLKDDDI-VQLYKPRHGDELYAVLFPENAV-YIIDIEKNEKRKVEYIPCAFYLG 581
           D A+ +   D +  ++     H D   +    +N   YI+ +  N+KRK +       L 
Sbjct: 194 DSADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSL--NQKRKKDEADAESVLS 251

Query: 582 VDDKDNIFYECDSKYVK 632
            DD D+I  E   K VK
Sbjct: 252 SDDNDSI-EEISIKKVK 267


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 149 KNSHIIH*RPTNKFGLQPCQSRSPIHSNRPGNTSRRQHPDKNGPVYTS 292
           KN   +H RP N+       SR+P  ++   NT  ++   + G  + S
Sbjct: 300 KNPGSVHIRPNNEVAPSSAPSRAPSTTSVESNTEGKESDIQTGSSFVS 347


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +1

Query: 148 QEQPYYPLKAYQQIWSTTLPIKISYSL**TWKHFKTTTSRQKWTSIYFERGIRSKSITLE 327
           QEQ    +  ++Q       + +SYS     K F+ +  ++K TS+  E  + SKSIT  
Sbjct: 61  QEQLQNEILGFKQDVKLLNNVLVSYSSEELEKRFEESLLKEKATSMEMESKLCSKSIT-P 119

Query: 328 VKLQRWI*N 354
           ++   W+ N
Sbjct: 120 LEYVSWLLN 128


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 242 NTSRRQHPDKNG 277
           N+ RRQHPD+NG
Sbjct: 86  NSCRRQHPDENG 97


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 228 LIDLETLQDDNIQTKMDQYILREGNTIKIDNVRGQASAVDMK 353
           L+ +  + +  +  K + + L+ GNT K+D    +A A DMK
Sbjct: 17  LLQICNMDEQTMFYKWESWCLQRGNTPKLDLDTFKAFAKDMK 58


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 82  SYLWSQLRHPRTAPSISMVILTQEQPYY 165
           SYLW  L   R  P     +L +  P Y
Sbjct: 339 SYLWKLLNSGRVVPGYGHAVLRKTDPRY 366


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 525 IEKNEKRKVEYIPCAFYLGVDDKDNIFYE 611
           IE  EKR V+  P +    +D+ ++ FY+
Sbjct: 149 IEDEEKRVVDLYPSSLRTKIDELNDYFYD 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,102
Number of Sequences: 5004
Number of extensions: 55910
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)