Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_K08
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 33 0.15
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 30 1.9
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 29 2.4
11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229 29 3.2
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594... 29 3.2
11_06_0707 + 26467214-26470309 27 9.9
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 27 9.9
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 27 9.9
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 33.5 bits (73), Expect = 0.15
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 339 AVDMKRNKV-YIASDDGLNELN--STDKANFVGLKDDDIVQL-YKPRHGDELYAVLFPEN 506
++D NK I S DG NE+ S + N V + QL ++PRHG Y + EN
Sbjct: 697 SLDFHPNKDDLICSCDGDNEIRFWSINNGNIVRIFKGGSSQLRFQPRHGG--YLAVASEN 754
Query: 507 AVYIIDIE 530
AV I+D+E
Sbjct: 755 AVSILDVE 762
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 189 NLLVGL*WIIWLFLSKDDHRNRRSSSWMPQLRPQ 88
NLL G I L+LS D H RSS + ++PQ
Sbjct: 635 NLLTGKKRFILLYLSSDFHAENRSSGTIVDMKPQ 668
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 519 IDIEKNEKRKVEY--IPCAFYLGVDDKDNIFYE 611
I+IEK++ V + +P A+ LGV KD +FY+
Sbjct: 78 IEIEKSDLTSVTWMKVPRAYQLGVRTKDGLFYK 110
>11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229
Length = 632
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 261 IQTKMDQYILREGNTIKIDNVRGQASAVDMKRNKVYIASDDGLNELNSTDKA 416
++ K+D ++ IKIDN+R S+V M+ KV S +GL + + +K+
Sbjct: 402 LKGKIDSTAWKDALAIKIDNLRANGSSV-MELPKVTSISAEGLVDSGNLNKS 452
>04_04_0014 +
22158441-22158669,22158782-22158878,22159264-22159461,
22159907-22160141,22160383-22160710,22160798-22161068,
22161169-22161424,22161508-22161964,22162096-22162286
Length = 753
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -2
Query: 632 FNIFGITFVKYIIFVIYAQIESAGNVFDF---PLFVFFYVDYVNSVFWK-QNSVQFISVS 465
F +F T YIIFV++ +F F P+F+F ++ FW+ + V IS S
Sbjct: 290 FELFFYTHQLYIIFVVFLAFHVGDFIFSFSAGPIFLFMLDRFLR--FWQCRAKVDIISAS 347
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = -1
Query: 276 PFLSGCCRLEVFPGL-----LE*IGDLDWQGCRPNL--LVGL*WIIWLFLSKDDHRNRRS 118
PFLSGC +E GL L + +L GC PNL + L + L+LSK + + S
Sbjct: 950 PFLSGCLLVERCEGLERISNLPQVRELRAGGC-PNLRHVEELGGLEQLWLSK--NMQKIS 1006
Query: 117 SSWMPQLRPQ 88
S W+P L Q
Sbjct: 1007 SLWVPGLEEQ 1016
>03_06_0209 - 32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 468 HGDELYAVLFPENAVYIIDIEKNEKRKVEYIPCAFYLGVDD 590
H D+ A++ A++ IE+N K K EY+ GV D
Sbjct: 1313 HRDDAVAMVLRCPALFTFSIERNYKPKFEYLVAEMGGGVHD 1353
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 635 NFNIFGITFVKYIIFVIYAQIESAGNVFDFPLFV 534
+F+ FGI ++ + IE AG +F +PL V
Sbjct: 177 HFSKFGIPLPDFVEVDTLSSIEKAGEMFGYPLMV 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,832
Number of Sequences: 37544
Number of extensions: 338880
Number of successful extensions: 915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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