Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_K08
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68303-7|CAA92642.2|  445|Caenorhabditis elegans Hypothetical pr...    35   0.044
AF435979-1|AAM46663.1|  445|Caenorhabditis elegans equilibrative...    35   0.044
U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation r...    31   0.54 
AF082010-1|AAD03022.1|  449|Caenorhabditis elegans UDP-N-acetylg...    31   0.54 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   2.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   2.2  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z92828-7|CAE48500.1|  700|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81561-2|CAB04551.2|  700|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF342986-1|AAL73338.1|  700|Caenorhabditis elegans KAL-1 protein.      28   5.0  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z68303-7|CAA92642.2|  445|Caenorhabditis elegans Hypothetical
           protein ZK809.4 protein.
          Length = 445

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = -2

Query: 650 KAFEQNFNIFGITFVKYIIF---VIYAQIESAGNVFDFPLFVFFYVDYVNSVFWKQNSVQ 480
           +AF Q  N+F + FV   IF   ++Y + E  G V+DFPL   +++D   + F + N   
Sbjct: 272 EAFPQLINVFLVFFVTLSIFPGVMMYVKDEKKGGVYDFPLPQKYFMDV--TTFLQFNVFA 329

Query: 479 FI 474
           FI
Sbjct: 330 FI 331


>AF435979-1|AAM46663.1|  445|Caenorhabditis elegans equilibrative
           nucleoside transporter1 protein.
          Length = 445

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = -2

Query: 650 KAFEQNFNIFGITFVKYIIF---VIYAQIESAGNVFDFPLFVFFYVDYVNSVFWKQNSVQ 480
           +AF Q  N+F + FV   IF   ++Y + E  G V+DFPL   +++D   + F + N   
Sbjct: 272 EAFPQLINVFLVFFVTLSIFPGVMMYVKDEKKGGVYDFPLPQKYFMDV--TTFLQFNVFA 329

Query: 479 FI 474
           FI
Sbjct: 330 FI 331


>U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation
           related protein 13 protein.
          Length = 449

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +3

Query: 222 FTLIDLETLQDDNIQTKMDQYILREGNTIKIDNVRGQASAVDMKRNKVYIASDDGLNELN 401
           F  IDL+ L   N   K +  +++E   + IDNV     + + K   V +  D  ++ + 
Sbjct: 333 FGKIDLDYLLPANFAKKTNLEVMKEAVELSIDNVASFVLSSENKGKSVRVMYDGNIDYIR 392

Query: 402 STDKANFV 425
             DK + +
Sbjct: 393 KADKLHIM 400


>AF082010-1|AAD03022.1|  449|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 449

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +3

Query: 222 FTLIDLETLQDDNIQTKMDQYILREGNTIKIDNVRGQASAVDMKRNKVYIASDDGLNELN 401
           F  IDL+ L   N   K +  +++E   + IDNV     + + K   V +  D  ++ + 
Sbjct: 333 FGKIDLDYLLPANFAKKTNLEVMKEAVELSIDNVASFVLSSENKGKSVRVMYDGNIDYIR 392

Query: 402 STDKANFV 425
             DK + +
Sbjct: 393 KADKLHIM 400


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +3

Query: 258 NIQTKMDQYILREGNTIKI-DNVRGQASAVDMKRNKVYIASDD 383
           +IQT ++ +++REG+TI I D +  QA+ +D+ +N +  A  D
Sbjct: 661 HIQTVINAWLIREGHTIGIGDTIADQATYLDI-QNTIRKAKQD 702


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +3

Query: 258 NIQTKMDQYILREGNTIKI-DNVRGQASAVDMKRNKVYIASDD 383
           +IQT ++ +++REG+TI I D +  QA+ +D+ +N +  A  D
Sbjct: 661 HIQTVINAWLIREGHTIGIGDTIADQATYLDI-QNTIRKAKQD 702


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 591 CHLRPNRKRRECIRLSSFRFFLCRLCKQRFLETKQRTIHLRVAACIAGRYR 439
           CHLR +  +     L  ++  +C+ CK+ F + K    H R       R+R
Sbjct: 426 CHLRTDTLKIPTKPLPIYKRHVCKTCKREFRDAKMLEKHRRFHLLAEHRWR 476


>Z92828-7|CAE48500.1|  700|Caenorhabditis elegans Hypothetical
           protein K03D10.1 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 396 LNSTDKANFVGLKDDDIVQLYKPRHGDELYAV-LFPENAVYIIDI 527
           L S D   F+G+++ D   +  P H        LFP N+VY+++I
Sbjct: 336 LQSDDDEEFIGIQERDRQSVVVPSHATSSEITGLFP-NSVYLVEI 379


>Z81561-2|CAB04551.2|  700|Caenorhabditis elegans Hypothetical
           protein K03D10.1 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 396 LNSTDKANFVGLKDDDIVQLYKPRHGDELYAV-LFPENAVYIIDI 527
           L S D   F+G+++ D   +  P H        LFP N+VY+++I
Sbjct: 336 LQSDDDEEFIGIQERDRQSVVVPSHATSSEITGLFP-NSVYLVEI 379


>AF342986-1|AAL73338.1|  700|Caenorhabditis elegans KAL-1 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 396 LNSTDKANFVGLKDDDIVQLYKPRHGDELYAV-LFPENAVYIIDI 527
           L S D   F+G+++ D   +  P H        LFP N+VY+++I
Sbjct: 336 LQSDDDEEFIGIQERDRQSVVVPSHATSSEITGLFP-NSVYLVEI 379


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 197 QPCQSRSPIHSNRPGNTSRRQHPDKNGP 280
           QP Q   P     PG   R  HP +NGP
Sbjct: 210 QPGQPGEPGSPGEPGPDGRAGHPGRNGP 237


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 197 QPCQSRSPIHSNRPGNTSRRQHPDKNGP 280
           QP Q   P     PG   R  HP +NGP
Sbjct: 210 QPGQPGEPGSPGEPGPDGRAGHPGRNGP 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,863
Number of Sequences: 27780
Number of extensions: 309828
Number of successful extensions: 963
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)