Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_J21
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    29   0.44 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.1  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   4.1  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   7.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    25   9.5  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   9.5  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   9.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.5  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 532 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGESS 648
           E   +L   V N I  ++KTC +S ND  ++  DY+S + S
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKS 789


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 311 NPVLSHG-GLLLDRYGEPPRLREAILRC 391
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 482 VQGPPQTRRGRAAHQPSSTPSSWRV 556
           V+  P+  RG+A ++PS    +W++
Sbjct: 343 VKANPRVNRGKAGYEPSENIINWKI 367


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 434 PAHEGKADRLRNRPHHVQGPPQTRRGRAAHQPSS 535
           P+  GK+   R    HVQGPP+     A +QPSS
Sbjct: 218 PSEFGKS---RMAAEHVQGPPRDIFTPADNQPSS 248


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +1

Query: 334 LTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSR--TGAPANTS 507
           ++S S+  + P + S  S L    +S++PS  +T S   S  AP  TSS   + +   +S
Sbjct: 159 ISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSS 218

Query: 508 WESGASALEHALKLESDVTNSIREVIKTCESS 603
             S +S+    L   S  T+SI     +  S+
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST 250


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 224 VTIRG*VAHHGADLLQHDEETD 289
           + IRG V HH  D + +D+  D
Sbjct: 59  IAIRGLVLHHEIDAVDYDQRVD 80


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 231  SGDEWLTMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVN-RPGFAKLFFDAATEER 407
            SGDE L +E        +   EE+AA++          + T+N +  F K++       +
Sbjct: 869  SGDELLLVELIFQGFFNQMPPEEIAAALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAK 928

Query: 408  EHAT 419
              AT
Sbjct: 929  RIAT 932


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 154 NSPHLNFSYNHRFFDDTQKNMR 89
           +SP+++F+Y+   F D QK +R
Sbjct: 95  SSPNMDFTYSINSFGDYQKQLR 116


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 506 DVFAGAPVRDEVGYGACQLSPHEQVVNEL 420
           D+  GAPVR +       +SPHE  + +L
Sbjct: 103 DIRVGAPVRTDADAIQASISPHECRLRDL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,061
Number of Sequences: 5004
Number of extensions: 43971
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)