Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_J21
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 58 6e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 54 7e-08
04_04_0701 + 27373057-27374013 30 1.4
03_02_0641 + 10076105-10076430,10076496-10076667,10076775-100769... 30 1.8
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 2.4
06_03_1258 + 28796643-28798169 29 3.2
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 29 3.2
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.2
05_05_0221 - 23385626-23386702 29 4.2
11_01_0752 - 6327269-6327764,6328571-6328839 28 5.6
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 7.4
10_08_0798 + 20649370-20649428,20649515-20649719 28 7.4
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 27 9.8
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.8
01_01_0876 + 6862321-6862398,6862442-6862747 27 9.8
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 58.0 bits (134), Expect = 6e-09
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +3
Query: 264 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 443
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 444 RG---KLTGSVTDLITYRGPRK 500
RG +L VT L + P K
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK 172
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 54.4 bits (125), Expect = 7e-08
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 297 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 467
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 468 TDLITYRGPRK 500
T L + P K
Sbjct: 194 TPLTEFDHPEK 204
>04_04_0701 + 27373057-27374013
Length = 318
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +1
Query: 331 GLTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGAPANTSW 510
G+ +++++ AP S SS L ++ +R ++ TT S G S + PTS P++ SW
Sbjct: 235 GVANKAVKTEAPTSAYSSSSL---SSMSRDTTATTSSAGTSTGSSEPTSFPVVTPSSWSW 291
Query: 511 E 513
+
Sbjct: 292 D 292
>03_02_0641 +
10076105-10076430,10076496-10076667,10076775-10076962,
10077128-10077286,10077518-10077863
Length = 396
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -2
Query: 611 SLKLLSQVLMTSRMLLVTSLS-SLRACSRADAPLSHDVFAGAPVRDEVGYGA 459
S ++ +L+ + L ++LS L R DA +S DVF+G+ VRD+ G GA
Sbjct: 17 STSIVFLLLLHAFSLPASALSFGLARRHRKDAAVSCDVFSGSWVRDDGGGGA 68
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 517 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 624
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>06_03_1258 + 28796643-28798169
Length = 508
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +1
Query: 391 LRLKNASTRPSSLTT-----CS*G--ES*QAP*PTSSRTGAPANTSWESGASALEHALKL 549
LR ASTRP S+ CS G + +AP P SS+ A A+ + + L+HAL L
Sbjct: 306 LRRLLASTRPKSVIVVEDVDCSLGLFDRTRAPAPPSSQDDADADADEQRNRAMLQHALTL 365
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 431 LPAHEGKADRLRNRPHHV--QGPPQTRRGRAAHQPSSTPS 544
+P KA+ NR H V QG P+TR +A+ STPS
Sbjct: 276 IPGEIRKAEDAVNRIHDVAVQGTPRTRLAMSANTDFSTPS 315
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 324 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 440
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>05_05_0221 - 23385626-23386702
Length = 358
Score = 28.7 bits (61), Expect = 4.2
Identities = 28/72 (38%), Positives = 31/72 (43%)
Frame = +2
Query: 299 SGRVNPVLSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGKADRLRNRPH 478
S V L HG L +G L ILRCCD R A +A A AD R +P
Sbjct: 36 SAAVLEALLHGASLPPAHGGAHALAAEILRCCD-RALAALRAG-GDAESSSADTKR-KPA 92
Query: 479 HVQGPPQTRRGR 514
Q P TRR R
Sbjct: 93 TAQ--PSTRRRR 102
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 413 RDQAH*LPAHEGKADRLRNRPHHVQGPPQTRRGRA 517
R A LP+ G +R R RP + P RRGRA
Sbjct: 133 RGAARLLPSTRGDRERCRVRPRRPRLPGARRRGRA 167
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 221 PVTIRG*VAHHGADLLQHDEETDPGGS 301
P RG + HG L H EE+ P GS
Sbjct: 461 PSIFRGNIGRHGEILSDHTEESQPKGS 487
>10_08_0798 + 20649370-20649428,20649515-20649719
Length = 87
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 241 SSPDGDGADVTLCSCGRS*GSNESEDSKENSP 146
SS G D T CSCG G N +E+ P
Sbjct: 23 SSARSGGGDHTTCSCGDHCGCNPCRCGRESQP 54
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 479 HVQGPPQTRRGRAAHQPSSTPSS 547
H+ G PQ RAAH TPSS
Sbjct: 438 HISGHPQEPSPRAAHSAPVTPSS 460
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 308 VNPVLSHGGLLLDRYGEPPRLREA 379
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
>01_01_0876 + 6862321-6862398,6862442-6862747
Length = 127
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 235 GMSGSPWSRLATT**GNRSRRKWPRQSST*PWGLTSRSI 351
G GSP L+ G R R WP + P G T+R I
Sbjct: 6 GGGGSPPPSLSDLAGGGRGRPIWPEEGGGRPAGATARGI 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,788
Number of Sequences: 37544
Number of extensions: 359480
Number of successful extensions: 1008
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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