Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_J21
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.63 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 493 PANTSWESGASALEHALKLESDVTNSI 573
           P   SW S  + +  A KL+ ++ NSI
Sbjct: 151 PTEASWHSPEAHISVAQKLQKEIPNSI 177


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 575 RMLLVTSLSSLRACSRADAPLSHDVFAG 492
           R+LL++++  +  CS  +  L  D+F G
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRG 37


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 503 VFAGAPVRDEVGYGACQLS 447
           VF  AP+   +GY  C LS
Sbjct: 90  VFKIAPIFKGIGYATCVLS 108


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 503 VFAGAPVRDEVGYGACQLS 447
           VF  AP+   +GY  C LS
Sbjct: 143 VFKIAPIFKGIGYATCVLS 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 531 RARPQAGE*RHQQHPGGHQDLREQLQRLPPG 623
           +A+PQ  + + QQ P   Q  ++Q Q+   G
Sbjct: 827 QAQPQQQQQQQQQQPQQQQQQQQQQQQQQRG 857


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,515
Number of Sequences: 438
Number of extensions: 3123
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)