Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_J12
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    30   0.34 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    27   3.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   5.5  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   7.2  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   7.2  
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    25   9.5  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   9.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.5  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   9.5  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +3

Query: 369 NADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTP----TSN 536
           NAD   G+ G        +ND SSE      DED  T+E+ +    ++S ++P    +S+
Sbjct: 334 NADSSAGSEGVDEGTSTEANDESSE----DDDEDNNTDEANEDAQSNVSDESPKGEGSSH 389

Query: 537 SDGSVVGCVNRTPLVSVQFRDKKLAS 614
           SD  V+   N    ++    D  L S
Sbjct: 390 SDNVVLSDGNSVKKMNEDGADTSLLS 415


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 339 DSSCEDAGENNADEKEGNGGKITN 410
           D  C+D+ E N  + EG GG ++N
Sbjct: 642 DVLCDDSPEGNLPDGEGEGGIVSN 665


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 273 VVPYSAESDCVIQETPVDVINIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSE 443
           V   S E D V+    +D+   DSS   A + N    EG   K   + L+ +  S+E
Sbjct: 58  VASESLEGDAVVS---IDINTEDSSLSPAKQENEKSPEGIEQKYQEEDLKDDKKSNE 111


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 501 NDDISVDTPTSNSDGSVVGCVNRTPLVSVQFRDKKLASSYKQKVK 635
           N DISV  P  ++ G+VV     TPL  V+ R +   SS  +K +
Sbjct: 169 NWDISVIAPICSALGTVVATTISTPLDIVKTRYQVATSSAMRKAE 213


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 420  SRVDSLFSLHFPLFHQHCFLQHPRTNCQYL 331
            SR D++  L+  L     F  H R NC+YL
Sbjct: 2583 SRADAVAELYASLNEDDMFYGHWRRNCKYL 2612


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 387 GNGGKITNQPLRSNDNSSELYTICVDEDLGTEE 485
           G+   I  +PL+    +S+L  +C DEDLG +E
Sbjct: 498 GDDETIQLEPLKKI-GASKLVELCNDEDLGVQE 529


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 432 NSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNSDGSVVGCVNRTPLVSVQFRDKKLA 611
           +S EL T+     + + +S+K  + D+       N  GS++G   ++ L       KK  
Sbjct: 632 SSDELSTLLERSTIQSIKSSKKISKDVE------NEKGSILGFSRKSSLKRSTVLSKKSH 685

Query: 612 SSYKQ 626
           SSYK+
Sbjct: 686 SSYKE 690


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 578 KRCPVYTAYYTTVAIRCRSVY 516
           K+C VY + +   ++RC+S+Y
Sbjct: 140 KKCNVYKSKFEESSLRCKSLY 160


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 312 ETPVDVINIDSSCEDAGENNADEKEGNGGKITNQ-PLRSND---NSSELYTICVDEDLGT 479
           E P  +++   SCEDA      E+ G  G + +   +  ND    ++ L  I  D D+  
Sbjct: 86  EIPAGLVDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGLTNANLKIILADIDMSK 145

Query: 480 EES 488
            E+
Sbjct: 146 PEN 148


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/84 (25%), Positives = 39/84 (46%)
 Frame = +3

Query: 342 SSCEDAGENNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDDISVD 521
           S   + G+NNADEK+    K +     SN +++E     V+     +      N D SV+
Sbjct: 55  SDVSNVGKNNADEKDTKKAKRSFD--ESNLSTNEEADKPVESKFVKKLKVYSKNADPSVE 112

Query: 522 TPTSNSDGSVVGCVNRTPLVSVQF 593
           T   +   +V   ++  PL++ ++
Sbjct: 113 TLQKDRVSNVDDHLSSNPLMAEEY 136


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 312  ETPVDVINIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSE 443
            ETP+D    DS    A E+N      +G +++     S +  S+
Sbjct: 952  ETPLDTAYFDSRGAGAAESNMSSSVNSGEEVSKDNNVSQERGSQ 995


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 318 PVDVI--NIDSSCEDAGENNADEKEGNGGKITNQPLRSN 428
           PVD+   N     E+ GEN +DE +GN   I ++ L SN
Sbjct: 20  PVDIATDNQKDKHENVGENVSDEDDGN--YIASKLLESN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,465
Number of Sequences: 5004
Number of extensions: 42349
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)