Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_J12
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.64 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 366  NNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDDI-SVDTPTSNSD 542
            N   + + N  K  NQPL  ND   +LY   +D ++   E+  +  D I S  + + +S+
Sbjct: 1021 NEVLQADMNALKNFNQPLLVNDQLGQLY---LDLEVEGFETKLVLEDGITSSGSDSGSSN 1077

Query: 543  GS 548
            GS
Sbjct: 1078 GS 1079


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 417 LRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNSDG 545
           + + D+S  ++TICV E + ++E  ++  D      P S   G
Sbjct: 24  IAAQDSSGRIFTICVPE-IYSKECDEMKKDSAVKGIPVSCISG 65


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 417 LRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNSDG 545
           + + D+S  ++TICV E + ++E  ++  D      P S   G
Sbjct: 24  IAAQDSSGRIFTICVPE-IYSKECDEMKKDSAVKGIPVSCISG 65


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 417 LRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNSDG 545
           + + D+S  ++TICV E + ++E  ++  D      P S   G
Sbjct: 24  IAAQDSSGRIFTICVPE-IYSKECDEMKKDSAVKGIPVSCISG 65


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 426 NDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNSDGSV 551
           +D ++  YT CV E      S  I   D+  +    +S G V
Sbjct: 464 DDGTTRFYTACVVEAFDYLHSRNIIYRDLKPENLLLDSQGYV 505


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = -3

Query: 323  YRCFLDNTIAFSGIRHYISI*TP 255
            Y C+++NT     + H + +  P
Sbjct: 1344 YSCYVENTFGHDTVTHQLIVHAP 1366


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 405 TNQPL---RSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSN 536
           T QP+   R     SE   I  D  + TE+S  + N   +++TPT++
Sbjct: 800 TTQPVISSRKEQKKSEEKNIN-DHCVTTEQSVVVTNVTTTINTPTTS 845


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,176
Number of Sequences: 438
Number of extensions: 3081
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)