Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_J02
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 141 7e-35
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 31 0.19
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 28 1.0
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 27 3.1
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 26 4.1
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 5.4
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 7.2
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 25 7.2
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 25 7.2
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 9.5
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 25 9.5
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 141 bits (342), Expect = 7e-35
Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 2/211 (0%)
Frame = +3
Query: 18 DLVIMYLRKPIQKIKSEVQIRLIRYYTASENAKVTYHEEMQNNFIATNIFQKALLTCGSA 197
D+V+ +K ++ + Q+RL+ +TA+E KV Y + + Q+ L GSA
Sbjct: 15 DVVMSLSKKFLKPSVASNQLRLL--FTAAER-KVNYP-----GHVPLSPLQRIFLVAGSA 66
Query: 198 VIALLDPHRG-DMIACLGEVTGENAIKY-MHSKMLQTEEGQDILKNKPRINSKTIAFETL 371
++ L P RG DMI+ LG+ +G+ + + +KML + G++ILK+KPR+ SK++ L
Sbjct: 67 IMGLKAPWRGGDMISVLGDASGQPFFLHRLLNKMLVDKTGREILKDKPRMTSKSLNLPFL 126
Query: 372 SQMPENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVMQRYREVHDLVHASLFMKTN 551
+P N+LG++Y D++ ++ D+R P +F+ DPE AYVMQRYRE HD HA M TN
Sbjct: 127 RTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVDDPEEAYVMQRYRESHDFYHAICNMPTN 186
Query: 552 MLGEVTVKWVEGIQTKLPMCIGGGIWGAARL 644
+ GE+ +KW+E + LP+ ++G RL
Sbjct: 187 IEGELAIKWLEFVNMGLPVGALSALFGPLRL 217
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 384 ENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVMQRYREVHDLVHASLFMKTNMLGE 563
ENS G D N ++DSR Q + +AY + Y E D +L ++ G
Sbjct: 9 ENSKGNSATDADTKNPSSSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESIHGS 68
Query: 564 VTVK 575
+++
Sbjct: 69 ESLE 72
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 456 VQFIADPELAYVMQRYREVHDLVHASLFMKTNMLGEVTVKWVEG 587
V + P++A + + R + L + LF K + LG + +WV+G
Sbjct: 270 VSRLLQPKIANITVQ-RPIDKLAKSKLFHKYSTLGHIEYRWVDG 312
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 261 ENAIKYMHSKMLQTEEGQDILKNKPRINSKTIAFETLSQMPENSLGR 401
E +K +H L ++ + I + K RIN T +ETL ++S G+
Sbjct: 150 EKQVKTLHD--LNEQKDKKIKELKERINDLTYDYETLKANADDSEGK 194
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 292 ILLCIYFIAFSPVTSPKQAIISP 224
ILLCI+F FS ++ P SP
Sbjct: 42 ILLCIFFTIFSTMSHPSLQCFSP 64
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 312 QDILKNKPRINSKTIAFETLSQMPENSL 395
+D+LK KPR+NS I LS E +L
Sbjct: 99 KDVLKGKPRLNSSKIHSVILSPTRELAL 126
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 18 DLVIMYLRKPIQKIKSEVQIRLIRYYTASENAKV 119
DLV Y +P+Q+ ++ + IR Y++ +N K+
Sbjct: 381 DLVHPYTHQPLQEALDKLPSQGIRLYSSFDNKKI 414
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 30 MYLRKPIQKIKSEVQIR--LIRYYTASENAKVTYHEEMQNNFIATNI--FQKALLTCGSA 197
+ LR P+ K EV IR +I YY A + + + +Q N++ I SA
Sbjct: 192 LLLRLPLTIHKLEVLIRKNIIPYYRAYKQIPLKIFKRLQKNYVRMLIPFHYPTYQRIQSA 251
Query: 198 VIALLD 215
V+ L+D
Sbjct: 252 VLTLVD 257
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +3
Query: 336 RINSKTIAFETLSQMPENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVMQRYR 506
+I SK + T + +PENS+ Y + +N + + ++ AD ++ R R
Sbjct: 184 KIQSKPLGTMTEAAIPENSIYYPYRKLILENRNPVEKFVTIEEFADAAYPQLVGRGR 240
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 3 KYHKSDLVIMYLRKPIQKIKSEVQIRLIRYYTASENAKVTYHEEMQNNFIATN 161
KY KSD + P QK E + ++ +N K+ + +N +++T+
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNGKLIAKIKWKNGYVSTH 356
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 312 QDILKNKPRINSKTIAFETLSQ---MPENSLGRVYADFMKDNNITA 440
+DI+ +++ +T++++ Q + + RV+ + +KD NI A
Sbjct: 212 EDIMYQLQQLDDETVSYDIQEQATNLSTDDARRVFTELLKDKNIGA 257
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.5
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +3
Query: 270 IKYMHSKMLQTEEG-QDILKNKPRINS-------KTIAFETLSQMPENSLGRVYADFMKD 425
IK M + Q EG ++ILK I S K I+ ++S P N R + MK
Sbjct: 129 IKAMPEEKRQEIEGNKEILKKSTTIRSTPVREPTKAISVASMSTSPSNYASRASSPDMKS 188
Query: 426 NNITADSRLPVQFIA 470
+ + P+Q +A
Sbjct: 189 SAAVTANVSPIQNVA 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,256
Number of Sequences: 5004
Number of extensions: 52956
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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