Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_J02
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88169-10|AAB42232.2| 231|Caenorhabditis elegans Coenzyme q (ub... 153 1e-37
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 30 1.6
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 30 1.6
AL023810-3|CAN99677.1| 123|Caenorhabditis elegans Hypothetical ... 29 2.9
AL023810-2|CAN99676.1| 194|Caenorhabditis elegans Hypothetical ... 29 2.9
AL023810-1|CAA19421.1| 194|Caenorhabditis elegans Hypothetical ... 29 2.9
U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical pr... 29 3.8
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 27 8.7
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 27 8.7
U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine rece... 27 8.7
U53155-1|AAC48268.1| 393|Caenorhabditis elegans Oocyte maturati... 27 8.7
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 27 8.7
U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbona... 27 8.7
U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbona... 27 8.7
AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion transpo... 27 8.7
AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion transpo... 27 8.7
>U88169-10|AAB42232.2| 231|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 4 protein.
Length = 231
Score = 153 bits (371), Expect = 1e-37
Identities = 77/159 (48%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Frame = +3
Query: 171 KALLTCGSAVIALLDPHRGDMIACLGEVTGENAIKYMHSKMLQTEE-GQDILKNKPRINS 347
+ LL GSAV A+ DP RGDM+A +GE T + K ++++ G+ +L KPRI++
Sbjct: 18 RMLLGIGSAVTAISDPKRGDMVAAMGETTAIGPVLENIRKRMESDVVGKRLLLEKPRISN 77
Query: 348 KTIAFETLSQMPENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVMQRYREVHDLVH 527
TI + L Q+P+ +LG++Y++F+ N + D+R V++I + E YVMQRYRE HD H
Sbjct: 78 GTIDRKWLRQLPDGTLGKLYSNFLDRLNTSPDARPTVKYIDNLEHLYVMQRYRETHDFTH 137
Query: 528 ASLFMKTNMLGEVTVKWVEGIQTKLPMCIGGGIWGAARL 644
+L KTNMLGEVTVK+ EGIQ LPMC+ GGI+G ARL
Sbjct: 138 IALEQKTNMLGEVTVKYFEGIQYGLPMCVTGGIFGGARL 176
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 252 VTGENAIKYMHSKMLQTEEGQDILKNKPRINSKTIA-FETLSQMPENSLGRVYADFMKDN 428
V G + +++ K E+ LK + N +T+ E S M N + +AD D+
Sbjct: 1841 VEGATPMFHIYRKWQMKEKA---LKQATKKNGETVPEIERPSNMYHNMIRLAFADHKIDS 1897
Query: 429 NITAD-SRLPVQFIADPELAYVMQRYREVHDLVHASLFMKTN 551
+IT+D S+ P + + E + + DL+ L+M+ N
Sbjct: 1898 SITSDRSKWPAEIL---EEVFESLTAKTPTDLISRELWMRAN 1936
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 252 VTGENAIKYMHSKMLQTEEGQDILKNKPRINSKTIA-FETLSQMPENSLGRVYADFMKDN 428
V G + +++ K E+ LK + N +T+ E S M N + +AD D+
Sbjct: 1841 VEGATPMFHIYRKWQMKEKA---LKQATKKNGETVPEIERPSNMYHNMIRLAFADHKIDS 1897
Query: 429 NITAD-SRLPVQFIADPELAYVMQRYREVHDLVHASLFMKTN 551
+IT+D S+ P + + E + + DL+ L+M+ N
Sbjct: 1898 SITSDRSKWPAEIL---EEVFESLTAKTPTDLISRELWMRAN 1936
>AL023810-3|CAN99677.1| 123|Caenorhabditis elegans Hypothetical
protein C16D2.1c protein.
Length = 123
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 504 REVHDLVHASLFMKTNMLGEVTVKWV 581
+E ++ ASLF++T+ LG+ KWV
Sbjct: 59 KECIQILEASLFLETSYLGKCAAKWV 84
>AL023810-2|CAN99676.1| 194|Caenorhabditis elegans Hypothetical
protein C16D2.1b protein.
Length = 194
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 504 REVHDLVHASLFMKTNMLGEVTVKWV 581
+E ++ ASLF++T+ LG+ KWV
Sbjct: 130 KECIQILEASLFLETSYLGKCAAKWV 155
>AL023810-1|CAA19421.1| 194|Caenorhabditis elegans Hypothetical
protein C16D2.1a protein.
Length = 194
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 504 REVHDLVHASLFMKTNMLGEVTVKWV 581
+E ++ ASLF++T+ LG+ KWV
Sbjct: 130 KECIQILEASLFLETSYLGKCAAKWV 155
>U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical
protein F35C8.5 protein.
Length = 300
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -3
Query: 616 PIHIGNLVWMPSTHLTVTSPSIFVFMNK 533
P+ + L+W+P T L + +P++F +++
Sbjct: 106 PMALVQLIWVPDTELPILAPTVFEMLSQ 133
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
363, isoform b protein.
Length = 2692
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 231 MIACLGEVTGENAIKYMHSKMLQTEEGQDILKNKPRINSKTIAF 362
+I CL E N I+Y + + G + ++ ++ SK +AF
Sbjct: 127 LIVCLAETHSGNVIRYANYLLKMLNNGNGLDEDTVKMASKALAF 170
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
363, isoform a protein.
Length = 2695
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 231 MIACLGEVTGENAIKYMHSKMLQTEEGQDILKNKPRINSKTIAF 362
+I CL E N I+Y + + G + ++ ++ SK +AF
Sbjct: 127 LIVCLAETHSGNVIRYANYLLKMLNNGNGLDEDTVKMASKALAF 170
>U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein20 protein.
Length = 286
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 340 IRGLFFKISCPSSVCNILLCIYFIAF 263
+R F I+ +VCNIL+C+ F+ F
Sbjct: 35 MRSSFGIITKNQAVCNILMCLLFLVF 60
>U53155-1|AAC48268.1| 393|Caenorhabditis elegans Oocyte maturation
defective protein2 protein.
Length = 393
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +3
Query: 249 EVTGENAIKYMHSKMLQT--EEGQDILKNKPRINSKT-----IAFETLSQMPENSLGRVY 407
E E++++ H M++T EE Q + + + S+T + + L ++ EN ++
Sbjct: 13 EARTESSVEPSHPDMMETVPEEQQKPISHIDDLLSETANLMAVKEQLLKEIAENE--HIH 70
Query: 408 ADFMKD-NNITADSRLPVQFIADPELAYVMQR 500
+ M+ N+ ++ LP+Q+ ADP + MQ+
Sbjct: 71 SMQMRALQNLPQEAILPLQYHADPRRRHRMQK 102
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
protein protein10, isoform b protein.
Length = 1189
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/41 (29%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 312 QDILKN-KPRINSKTIAFETLSQMPENSLGRVYADFMKDNN 431
QD+L++ + R+++ TI+ +L ++ ++GRV ++ D N
Sbjct: 1115 QDVLESLETRLHAPTISKNSLQKLSLQTIGRVLFEYRADKN 1155
>U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform b protein.
Length = 883
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -2
Query: 425 ILHEVGINTTKAVFRHLRQSFKCNRFGINTRFVFQNILSLFSL*HFTVHIFYSIFASNFA 246
+L + + + A+F +LRQ + FG R + +N +F++ V I Y I N
Sbjct: 617 LLQLIMVVVSIAIFHYLRQVSRSTFFGRTFRNLCKNFGGIFAV--IAVSIAYRILFQNVG 674
Query: 245 *ASNHITPVRVEQS 204
A I PV V QS
Sbjct: 675 VAVVDI-PVAVGQS 687
>U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform a protein.
Length = 956
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -2
Query: 425 ILHEVGINTTKAVFRHLRQSFKCNRFGINTRFVFQNILSLFSL*HFTVHIFYSIFASNFA 246
+L + + + A+F +LRQ + FG R + +N +F++ V I Y I N
Sbjct: 617 LLQLIMVVVSIAIFHYLRQVSRSTFFGRTFRNLCKNFGGIFAV--IAVSIAYRILFQNVG 674
Query: 245 *ASNHITPVRVEQS 204
A I PV V QS
Sbjct: 675 VAVVDI-PVAVGQS 687
>AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion
transporter ABTS-4b protein.
Length = 936
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -2
Query: 425 ILHEVGINTTKAVFRHLRQSFKCNRFGINTRFVFQNILSLFSL*HFTVHIFYSIFASNFA 246
+L + + + A+F +LRQ + FG R + +N +F++ V I Y I N
Sbjct: 617 LLQLIMVVVSIAIFHYLRQVSRSTFFGRTFRNLCKNFGGIFAV--IAVSIAYRILFQNVG 674
Query: 245 *ASNHITPVRVEQS 204
A I PV V QS
Sbjct: 675 VAVVDI-PVAVGQS 687
>AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion
transporter ABTS-4a protein.
Length = 956
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -2
Query: 425 ILHEVGINTTKAVFRHLRQSFKCNRFGINTRFVFQNILSLFSL*HFTVHIFYSIFASNFA 246
+L + + + A+F +LRQ + FG R + +N +F++ V I Y I N
Sbjct: 617 LLQLIMVVVSIAIFHYLRQVSRSTFFGRTFRNLCKNFGGIFAV--IAVSIAYRILFQNVG 674
Query: 245 *ASNHITPVRVEQS 204
A I PV V QS
Sbjct: 675 VAVVDI-PVAVGQS 687
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,350
Number of Sequences: 27780
Number of extensions: 295047
Number of successful extensions: 690
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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