Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_I24
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 54 1e-08
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 47 2e-06
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 31 0.19
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 30 0.25
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.77
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 5.5
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 7.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 25 7.2
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 9.5
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 54.4 bits (125), Expect = 1e-08
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +3
Query: 252 INYGHSQWGFNNWSWSVTKQELDFIDFN--NGKYCAGVVAFVSIKVKSFDIYRENIGYAT 425
I + +GFN WS S+ +DF+D N NG+ G+ V + +K Y E+IGY +
Sbjct: 62 IELANEIFGFNGWSSSIRSINVDFMDENKENGRISLGLSVIVRVTIKD-GAYHEDIGYGS 120
Query: 426 -SFAATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 542
K A K +K T+AL+ L +FG S+ + D
Sbjct: 121 IDNCRGKASAFEKCKKEGTTDALKRALRNFGNSLGNCMYD 160
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 47.2 bits (107), Expect = 2e-06
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +3
Query: 252 INYGHSQWGFNNWSWSVTKQELDFI-DFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT- 425
I + +GFN WS S+ +D++ + K+ G+ V + +K + E++GY +
Sbjct: 54 IELANEIFGFNGWSSSIQDIHVDYVEETKEKKFNVGISVIVRVTLKD-GSFHEDVGYGSI 112
Query: 426 SFAATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 542
K A K +K T+AL+ L +FG S+ L D
Sbjct: 113 ENCRVKALAYEKCKKEGTTDALKRALRNFGSSMGNCLYD 151
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 179 AVGRLSFCDKIVIMSTFRIFLKKLLRFRNFSA 84
A+G LS CDK ++TFR+ L K++ FS+
Sbjct: 196 AIGLLSACDKFETVNTFRLGLSKIVDEEFFSS 227
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 150 NSNYEHISNFPQEIITLQKLFSSFLGKYVS 61
N+ H+ NF +E++ +KLFSS VS
Sbjct: 540 NNGLSHLQNFSEELLKKRKLFSSLFSNNVS 569
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 298 VSPNKNWISSTSTTGSIAPASSPLYR 375
VSPNK WI+++S+ G+I S+ +R
Sbjct: 62 VSPNKRWIATSSSDGTIKIWSALTFR 87
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 280 STIGAGVSPNKNWISSTSTTGSIAPASSPLY 372
S+ S N ST+TTGS +SSP Y
Sbjct: 265 SSFTPSYSTNLTTTGSTTTTGSATVSSSPFY 295
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 237 RRQQLINYGHSQWGFN 284
+++Q+INY +S WG N
Sbjct: 7 KKKQIINYANSNWGQN 22
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 397 ISKLFTLIDTKATTPAQYFPLLKSMKSNSCLVTLQLQ 287
+ K+ +LID K + ++FPLL K +TLQ++
Sbjct: 53 VPKIRSLIDEKESLKNEFFPLLSLKKE----ITLQIE 85
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 307 NKNWISSTSTTGSIAPASSPLYRSK 381
N++W+ +TT S++ +SP + K
Sbjct: 664 NRDWVQPVNTTSSVSAFASPRIKPK 688
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +1
Query: 163 DNRPTAPQICQILTICL 213
D RP++P++ ++L +CL
Sbjct: 112 DTRPSSPRLAELLKVCL 128
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 97 LKRNNFLRKIRNVLIITILSQNDNRPTAPQ 186
L+ NF++++R + +T+L+ + RP Q
Sbjct: 462 LEALNFVKRVREITKMTMLASSTTRPATGQ 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,011
Number of Sequences: 5004
Number of extensions: 49704
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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