Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_I24
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0257 + 1898950-1899636 31 1.1
11_01_0259 + 1981554-1982249 29 3.2
01_03_0264 - 14419381-14419431,14419807-14419875,14420771-144208... 29 3.2
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 29 4.3
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 28 7.5
06_01_1013 - 7931756-7935109 28 7.5
01_03_0022 + 11724319-11725381,11725476-11725582 28 7.5
>12_01_0257 + 1898950-1899636
Length = 228
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 201 DNMLEDDHEQHQRRQQLINYGHSQWGFNNWSW 296
D++ + H ++ QQLI+ ++ GFN WSW
Sbjct: 13 DDVPDTSHMSDEQFQQLIDQYWAEQGFNIWSW 44
>11_01_0259 + 1981554-1982249
Length = 231
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 201 DNMLEDDHEQHQRRQQLINYGHSQWGFNNWSW 296
D++ + H ++ QQ I+ ++ GFN WSW
Sbjct: 13 DDVPDTSHMSDEQFQQFIDQYWAEQGFNIWSW 44
>01_03_0264 -
14419381-14419431,14419807-14419875,14420771-14420817,
14421340-14422474
Length = 433
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 458 INSKSFSGGE*SGVANIFPVYIETLYFDRYKGDDAGAILPVVEVDEIQFLFGDTPAPI 285
+NS F G VAN+ +Y + +R G GA+L V E+ + F D PI
Sbjct: 145 LNSNRFCGVIPEEVANMTRLYELDVSNNRLVGAFPGAVLRVPELSYLDIRFNDFDGPI 202
>10_08_0253 -
16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 530 SSNAASKAEKCLSKSICYRALPRLINSKSFSGGE*SGVANIFPVYIETLYFDRYKGDDAG 351
S +AA+ A + L++ RA PR++ S +GG ++ E L RY G
Sbjct: 6 SFSAAAAAARLLARCPALRADPRVLALASTAGGGGPSRDDVAAALAEPLLHPRYTVPVVG 65
Query: 350 AILPV 336
LP+
Sbjct: 66 CFLPL 70
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +3
Query: 405 ENIGYATSFAATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLXNKTESVLIGTE 584
E +GY TS A FA+ + +A+ ++ FGGS L K V IG
Sbjct: 162 EKLGYLTSTQALADFAVLITSLKHNLSAVSSPVVVFGGSYGGMLASWFRLKYPHVTIGAV 221
Query: 585 SHS 593
+ S
Sbjct: 222 ASS 224
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 168 SPD-CSPNLPNPDNMLEDDHEQHQRRQQLINYG 263
+PD P LP+P+ ED +Q QRR + N+G
Sbjct: 47 APDRIGPILPSPNPASEDRPQQQQRRPRRRNHG 79
>01_03_0022 + 11724319-11725381,11725476-11725582
Length = 389
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 180 SPNLPNPDNMLEDDHEQHQRRQQLINYGHSQWGFNNW 290
+P+ +PD + + + +RQ + YG GF W
Sbjct: 218 TPSSSSPDTATQSESSETTQRQPFMGYGQMANGFPKW 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,065
Number of Sequences: 37544
Number of extensions: 301152
Number of successful extensions: 722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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