Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_I24
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA...    26   1.6  
AY094724-1|AAM11077.1|  788|Drosophila melanogaster GH21171p pro...    26   1.7  
AE014297-2161|ABC66177.1|  297|Drosophila melanogaster CG8927-PB...    30   3.2  
AE014297-2160|AAF55283.2|  354|Drosophila melanogaster CG8927-PA...    30   3.2  
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    28   9.6  
M11798-1|AAA28863.1|  471|Drosophila melanogaster protein ( Dros...    28   9.6  
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    28   9.6  

>AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA
            protein.
          Length = 2759

 Score = 26.2 bits (55), Expect(2) = 1.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 264  HSQWGFNNWSWS 299
            H  WG  NWSWS
Sbjct: 2710 HGSWGRVNWSWS 2721



 Score = 23.0 bits (47), Expect(2) = 1.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 285  NWSWSVTKQELDFIDFNNGKYCAG 356
            NWSWS ++  +++    +GK   G
Sbjct: 2735 NWSWSWSRSRVNWSGRRSGKVLDG 2758


>AY094724-1|AAM11077.1|  788|Drosophila melanogaster GH21171p
           protein.
          Length = 788

 Score = 26.2 bits (55), Expect(2) = 1.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 264 HSQWGFNNWSWS 299
           H  WG  NWSWS
Sbjct: 739 HGSWGRVNWSWS 750



 Score = 23.0 bits (47), Expect(2) = 1.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 285 NWSWSVTKQELDFIDFNNGKYCAG 356
           NWSWS ++  +++    +GK   G
Sbjct: 764 NWSWSWSRSRVNWSGRRSGKVLDG 787


>AE014297-2161|ABC66177.1|  297|Drosophila melanogaster CG8927-PB,
           isoform B protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 171 PDCSPNLPNP---DNMLEDDH--EQHQRRQQLINYGHSQWGFNNWSWSVT 305
           P   P  P P    N L+DDH  +Q QRR+Q ++    +W   N   S+T
Sbjct: 226 PRPKPVQPRPIIDQNQLQDDHVDQQQQRRRQPVSQTIRKWREENEDGSIT 275


>AE014297-2160|AAF55283.2|  354|Drosophila melanogaster CG8927-PA,
           isoform A protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 171 PDCSPNLPNP---DNMLEDDH--EQHQRRQQLINYGHSQWGFNNWSWSVT 305
           P   P  P P    N L+DDH  +Q QRR+Q ++    +W   N   S+T
Sbjct: 209 PRPKPVQPRPIIDQNQLQDDHVDQQQQRRRQPVSQTIRKWREENEDGSIT 258


>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
           D.melanogaster RpII215gene encoding RNA polymerase II,
           largest subunit, completecds. ).
          Length = 1896

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 388 VSIYTGKILATPLHSPPLKDLLFISRGSAR*QMLF 492
           V  Y  K+L +P H+P +K+++  SRG  R ++ +
Sbjct: 106 VCFYCSKMLVSP-HNPKIKEIVMKSRGQPRKRLAY 139


>M11798-1|AAA28863.1|  471|Drosophila melanogaster protein (
           Drosophila melanogasterRNA polymerase II large subunit
           gene, 5' end. ).
          Length = 471

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 388 VSIYTGKILATPLHSPPLKDLLFISRGSAR*QMLF 492
           V  Y  K+L +P H+P +K+++  SRG  R ++ +
Sbjct: 106 VCFYCSKMLVSP-HNPKIKEIVMKSRGQPRKRLAY 139


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
           protein.
          Length = 1887

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 388 VSIYTGKILATPLHSPPLKDLLFISRGSAR*QMLF 492
           V  Y  K+L +P H+P +K+++  SRG  R ++ +
Sbjct: 106 VCFYCSKMLVSP-HNPKIKEIVMKSRGQPRKRLAY 139


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,731,668
Number of Sequences: 53049
Number of extensions: 533062
Number of successful extensions: 1823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)