Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_I24
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    31   0.54 
U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine rece...    28   5.0  
U88314-5|AAF99882.1|  146|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 295 GVSPNKNW--ISSTSTTGSIAPASSPLYRSK*RVSIYTGKILATPL 426
           G+SP   W  +SST T  ++A A   +Y     + +YTG ++ TPL
Sbjct: 638 GLSPVDTWNDLSSTFTAANLA-ALKTVYADPADIDLYTGLVMETPL 682


>U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical
           protein F32E10.2 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 201 DNMLEDDHEQHQRRQQLINYG----HSQWGFNNWSW 296
           + + ED+ +  ++R++++        S+WGF +W W
Sbjct: 234 EEIQEDEDDDDEQREEVVTTAPVETKSRWGFGSWKW 269


>U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein51 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 330 FNNGKYCAGVVAFVSIKVKSFDIYRENI-GYATSFAATKGFAIYK 461
           F    +CA  V     + +  D  RE+  GYA+ FA  K FAIY+
Sbjct: 146 FTFSLFCAAAVN----REEQMDYVREHYPGYASEFAQLKNFAIYR 186


>U88314-5|AAF99882.1|  146|Caenorhabditis elegans Hypothetical
           protein C46H11.3 protein.
          Length = 146

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 168 SPDCSPNLPNPDNMLEDDHEQHQRRQQLIN--YGHSQWGFNN 287
           S DC PN+      LE +  ++  +  L+N  +GHS+    N
Sbjct: 26  SADCGPNVQEVRQFLESNRLEYALQSVLLNPPFGHSEQELKN 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,591
Number of Sequences: 27780
Number of extensions: 274926
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)